#=GENOME_DIFF	1.0
#=AUTHOR	
MOB	769	56,31	REL606	16975	IS150	-1	-14	gene_name=mokC/nhaA	gene_position=intergenic (-17/-528)	gene_product=regulatory protein for HokC, overlaps CDS of hokC/pH-dependent sodium/proton antiporter	locus_tag=ECB_00017/ECB_00018	snp_type=intergenic
SNP	796	224	REL606	70867	C	aa_new_seq=G	aa_position=92	aa_ref_seq=D	codon_new_seq=GGC	codon_position=2	codon_ref_seq=GAC	gene_list=araA	gene_name=araA	gene_position=275	gene_product=L-arabinose isomerase	gene_strand=<	locus_tag=ECB_00064	snp_type=nonsynonymous
SNP	797	225	REL606	88134	T	gene_name=leuO/ilvI	gene_position=intergenic (+18/-300)	gene_product=leucine transcriptional activator/acetolactate synthase III large subunit	locus_tag=ECB_00078/ECB_00079	snp_type=intergenic
SNP	798	226	REL606	101840	G	aa_new_seq=M	aa_position=212	aa_ref_seq=M	codon_new_seq=GTG	codon_position=1	codon_ref_seq=TTG	gene_list=ftsW	gene_name=ftsW	gene_position=634	gene_product=integral membrane protein involved in stabilizing FstZ ring during cell division	gene_strand=>	locus_tag=ECB_00090	snp_type=synonymous
SNP	799	227	REL606	132062	T	aa_new_seq=H	aa_position=449	aa_ref_seq=H	codon_new_seq=CAT	codon_position=3	codon_ref_seq=CAC	gene_list=lpdA	gene_name=lpdA	gene_position=1347	gene_product=dihydrolipoamide dehydrogenase	gene_strand=>	locus_tag=ECB_00115	snp_type=synonymous
MOB	770	59,62	REL606	146104	IS150	1	1	gene_list=yadG	gene_name=yadG	gene_position=coding (523/927 nt)	gene_product=predicted transporter subunit: ATP-binding component of ABC superfamily	gene_strand=>	ins_start=ATG	locus_tag=ECB_00126
SNP	800	228	REL606	226159	A	aa_new_seq=T	aa_position=163	aa_ref_seq=P	codon_new_seq=ACT	codon_position=1	codon_ref_seq=CCT	gene_list=gmhB	gene_name=gmhB	gene_position=487	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_00199	snp_type=nonsynonymous
MOB	771	60,71	REL606	336055	IS150	-1	3	gene_list=lacZ	gene_name=lacZ	gene_position=coding (2805-2807/3075 nt)	gene_product=beta-D-galactosidase	gene_strand=<	locus_tag=ECB_00298
SNP	801	261	REL606	433668	T	aa_new_seq=C	aa_position=55	aa_ref_seq=R	codon_new_seq=TGT	codon_position=1	codon_ref_seq=CGT	gene_list=hupB	gene_name=hupB	gene_position=163	gene_product=HU, DNA-binding transcriptional regulator, beta subunit	gene_strand=>	locus_tag=ECB_00392	snp_type=nonsynonymous
MOB	772	9,61	REL606	490481	IS150	1	3	gene_name=ybbN/ybbO	gene_position=intergenic (-34/+25)	gene_product=predicted thioredoxin domain-containing protein/short chain dehydrogenase	locus_tag=ECB_00443/ECB_00444	snp_type=intergenic
SNP	802	263	REL606	490484	T	gene_name=ybbN/ybbO	gene_position=intergenic (-37/+24)	gene_product=predicted thioredoxin domain-containing protein/short chain dehydrogenase	locus_tag=ECB_00443/ECB_00444	snp_type=intergenic
INS	803	303,304	REL606	588492	AA	gene_name=ybdK/insJ-1	gene_position=intergenic (-219/-50)	gene_product=gamma-glutamyl:cysteine ligase/IS150 hypothetical protein	locus_tag=ECB_00542/ECB_00543	snp_type=intergenic
DEL	764	308,12	REL606	590472	10624	gene_name=hokE–[fepE]	gene_product=hokE, insL-3, entD, fepA, fes, ybdZ, entF, [fepE]	locus_tag=[ECB_00547]–[ECB_00554]	mediated=IS150
MOB	773	76,57	REL606	651703	IS150	1	4	gene_name=ybeB/phpB	gene_position=intergenic (-83/+174)	gene_product=hypothetical protein/predicted alpha-ribazole-5'-P phosphatase	locus_tag=ECB_00606/ECB_00607	snp_type=intergenic
INS	804	313	REL606	666133	T	gene_list=gltL	gene_name=gltL	gene_position=pseudogene (355/387 nt)	gene_product=ATP-binding protein of glutamate/aspartate transport system; b0652_2	gene_strand=<	locus_tag=ECB_00618	snp_type=pseudogene
DEL	805	365	REL606	796336	1	gene_name=ECB_00737/ECB_00738	gene_position=intergenic (-7/-419)	gene_product=hypothetical protein/hypothetical protein	locus_tag=ECB_00737/ECB_00738	snp_type=intergenic
MOB	774	47,28	REL606	896463	IS150	1	3	gene_list=ECB_00838	gene_name=ECB_00838	gene_position=coding (159-161/432 nt)	gene_product=putative phage tail protein	gene_strand=>	locus_tag=ECB_00838
SNP	806	366	REL606	901512	A	aa_new_seq=E	aa_position=354	aa_ref_seq=D	codon_new_seq=GAA	codon_position=3	codon_ref_seq=GAT	gene_list=ECB_00845	gene_name=ECB_00845	gene_position=1062	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_00845	snp_type=nonsynonymous
MOB	775	13,15	REL606	962005	IS186	-1	6	gene_name=dmsC/ycaC	gene_position=intergenic (+16/+14)	gene_product=dimethyl sulfoxide reductase, anaerobic, subunit C/predicted hydrolase	locus_tag=ECB_00900/ECB_00901	snp_type=intergenic
MOB	776	23,30	REL606	969836	IS150	1	3	gene_list=pflB	gene_name=pflB	gene_position=coding (810-812/2283 nt)	gene_product=pyruvate formate lyase I	gene_strand=<	locus_tag=ECB_00907
MOB	777	41,70	REL606	1102032	IS150	-1	3	gene_list=phoH	gene_name=phoH	gene_position=coding (756-758/1065 nt)	gene_product=conserved protein with nucleoside triphosphate hydrolase domain	gene_strand=>	locus_tag=ECB_01022
SNP	807	386	REL606	1166129	C	gene_name=fabG/acpP	gene_position=intergenic (+156/-55)	gene_product=3-oxoacyl-[acyl-carrier-protein] reductase/acyl carrier protein	locus_tag=ECB_01089/ECB_01090	snp_type=intergenic
SNP	808	390	REL606	1207861	G	aa_new_seq=T	aa_position=47	aa_ref_seq=N	codon_new_seq=ACC	codon_position=2	codon_ref_seq=AAC	gene_list=ycfC	gene_name=ycfC	gene_position=140	gene_product=hypothetical protein	gene_strand=<	locus_tag=ECB_01130	snp_type=nonsynonymous
MOB	778	72,49	REL606	1376383	IS150	-1	3	gene_list=ycjT	gene_name=ycjT	gene_position=coding (132-134/2268 nt)	gene_product=predicted hydrolase	gene_strand=>	locus_tag=ECB_01293
MOB	779	68,20	REL606	1462266	IS150	1	3	gene_name=mokB/trg	gene_position=intergenic (-28/-311)	gene_product=regulatory peptide/methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor	locus_tag=ECB_01377/ECB_01378	snp_type=intergenic
DEL	765	484	REL606	1609175	7554	between=IS3	gene_name=ybcW–[ECB_01526]	gene_product=ybcW, gnsB, ynfN, ECB_01516, cspI, ydfP, ydfQ, ydfR, essQ, ECB_01522, ECB_01523, insE-4, insF-4, [ECB_01526]	locus_tag=[ECB_01513]–[ECB_01526]
MOB	780	10,35	REL606	1619834	IS150	-1	3	gene_name=hokD/ECB_01533	gene_position=intergenic (-71/+139)	gene_product=small toxic polypeptide/conserved hypothetical protein	locus_tag=ECB_01532/ECB_01533	snp_type=intergenic
SNP	809	489	REL606	1733865	T	aa_new_seq=S	aa_position=301	aa_ref_seq=A	codon_new_seq=TCC	codon_position=1	codon_ref_seq=GCC	gene_list=pykF	gene_name=pykF	gene_position=901	gene_product=pyruvate kinase	gene_strand=>	locus_tag=ECB_01645	snp_type=nonsynonymous
SNP	810	490	REL606	1746189	A	gene_name=ydiJ/ydiK	gene_position=intergenic (-237/-152)	gene_product=predicted FAD-linked oxidoreductase/predicted inner membrane protein	locus_tag=ECB_01656/ECB_01657	snp_type=intergenic
SNP	811	491	REL606	1749019	A	gene_list=ydiM	gene_name=ydiM	gene_position=pseudogene (326/858 nt)	gene_product=putative transport protein (MFS family); b1690_2	gene_strand=>	locus_tag=ECB_01659	snp_type=pseudogene
MOB	781	44,69	REL606	1859000	IS150	-1	3	gene_list=yeaS	gene_name=yeaS	gene_position=coding (336-338/639 nt)	gene_product=neutral amino-acid efflux system	gene_strand=<	locus_tag=ECB_01768
SNP	812	493	REL606	1879026	A	aa_new_seq=V	aa_position=380	aa_ref_seq=D	codon_new_seq=GTT	codon_position=2	codon_ref_seq=GAT	gene_list=yoaE	gene_name=yoaE	gene_position=1139	gene_product=fused predicted membrane protein/conserved protein	gene_strand=<	locus_tag=ECB_01786	snp_type=nonsynonymous
INS	813	494	REL606	1902276	T	gene_list=yebY	gene_name=yebY	gene_position=coding (7/342 nt)	gene_product=hypothetical protein	gene_strand=<	locus_tag=ECB_01810
MOB	782	32,24	REL606	1915406	IS1	1	9	gene_list=yebK	gene_name=yebK	gene_position=coding (179-187/870 nt)	gene_product=predicted DNA-binding transcriptional regulator	gene_strand=>	locus_tag=ECB_01824
SNP	814	495	REL606	1930575	A	aa_new_seq=L	aa_position=137	aa_ref_seq=F	codon_new_seq=TTA	codon_position=3	codon_ref_seq=TTC	gene_list=yecE	gene_name=yecE	gene_position=411	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_01839	snp_type=nonsynonymous
SNP	815	504	REL606	2002475	A	gene_name=cobT/cobS	gene_position=intergenic (-8/+4)	gene_product=nicotinate-nucleotide- dimethylbenzimidazolephosphoribosyltransferase/cobalamin synthase	locus_tag=ECB_01900/ECB_01901	snp_type=intergenic
MOB	783	6,39	REL606	2019805	IS150	-1	3	gene_name=yeeZ/hisL	gene_position=intergenic (-234/-191)	gene_product=predicted epimerase, with NAD(P)-binding Rossmann-fold domain/his operon leader peptide	locus_tag=ECB_01919/ECB_01920	snp_type=intergenic
AMP	795	66	REL606	2053849	89247	2	gene_name=[wcaJ]–[insB-16]	gene_product=<i><b>89 genes</b><BR>[wcaJ], cpsG, cpsB, wcaI, wcaH, wcaG, gmd, wcaF, wcaE, wcaD, wcaC, wcaB, wcaA, wzc, wzb, wza, yegH, asmA, dcd, udk, yegE, alkA, yegD, yegI, yegK, yegL, yegM, yegN, yegO, yegB, baeS, baeR, yegP, yegQ, ogrK, yegZ, ECB_01989, ECB_01990, ECB_01991, ECB_01992, ECB_01993, ECB_01994, ECB_01995, ECB_01996, ECB_01997, ECB_01998, ECB_01999, ECB_02000, ECB_02001, ECB_02002, ECB_02003, ECB_02004, ECB_02005, ECB_02006, ECB_02007, ECB_02008, ECB_02009, ECB_02010, ECB_02011, ECB_02012, ECB_02013, yegR, yegS, gatR, gatD, gatC, gatB, gatA, gatZ, insA-15, insB-15, gatZ, gatY, fbaB, yegT, yegU, yegV, yegW, yegX, thiD, thiM, ECB_02033, ECB_02034, ECB_02035, ECB_02036, ECB_02037, ECB_02038, ECB_02039, [insB-16]</i>	locus_tag=[ECB_01953]–[ECB_02040]
SNP	816	530	REL606	2219638	G	aa_new_seq=A	aa_position=208	aa_ref_seq=S	codon_new_seq=GCT	codon_position=1	codon_ref_seq=TCT	gene_list=yeiR	gene_name=yeiR	gene_position=622	gene_product=predicted enzyme	gene_strand=>	locus_tag=ECB_02103	snp_type=nonsynonymous
MOB	784	52,50	REL606	2283472	IS150	-1	3	gene_name=yfaA/gyrA	gene_position=intergenic (-128/+19)	gene_product=hypothetical protein/DNA gyrase subunit A	locus_tag=ECB_02156/ECB_02157	snp_type=intergenic
SNP	817	536	REL606	2323543	A	aa_new_seq=L	aa_position=188	aa_ref_seq=Q	codon_new_seq=CTG	codon_position=2	codon_ref_seq=CAG	gene_list=yfbB	gene_name=yfbB	gene_position=563	gene_product=predicted peptidase	gene_strand=<	locus_tag=ECB_02190	snp_type=nonsynonymous
MOB	785	38,18	REL606	2397529	IS150	-1	-14	gene_list=yfcTU	gene_name=yfcTU	gene_position=coding (1137-1152/2646 nt)	gene_product=predicted outer membrane export usher protein	gene_strand=<	locus_tag=ECB_02262
MOB	786	63,55	REL606	2448493	IS186	-1	6	gene_name=nupC/yfeA	gene_position=intergenic (+24/+21)	gene_product=nucleoside (except guanosine) transporter/predicted diguanylate cyclase	locus_tag=ECB_02302/ECB_02303	snp_type=intergenic
MOB	787	51,14	REL606	2591648	IS150	1	3	gene_list=hcaC	gene_name=hcaC	gene_position=coding (42-44/321 nt)	gene_product=3-phenylpropionate dioxygenase, predicted ferredoxin subunit	gene_strand=>	ins_start=G	locus_tag=ECB_02432
SNP	818	555	REL606	2614425	A	aa_new_seq=I	aa_position=612	aa_ref_seq=M	codon_new_seq=ATT	codon_position=3	codon_ref_seq=ATG	gene_list=purL	gene_name=purL	gene_position=1836	gene_product=phosphoribosylformylglycinamidine synthase	gene_strand=<	locus_tag=ECB_02449	snp_type=nonsynonymous
MOB	788	75,43	REL606	2655781	IS150	-1	3	gene_list=yfiH	gene_name=yfiH	gene_position=coding (660-662/732 nt)	gene_product=hypothetical protein	gene_strand=<	locus_tag=ECB_02483
SNP	819	563	REL606	2702361	A	aa_new_seq=S	aa_position=160	aa_ref_seq=G	codon_new_seq=AGC	codon_position=1	codon_ref_seq=GGC	gene_list=proX	gene_name=proX	gene_position=478	gene_product=glycine betaine transporter subunit	gene_strand=>	locus_tag=ECB_02535	snp_type=nonsynonymous
DEL	820	578	REL606	2775879	1	gene_name=insJ-3/cysH	gene_position=intergenic (-49/+200)	gene_product=IS150 hypothetical protein/phosphoadenosine phosphosulfate reductase	locus_tag=ECB_02606/ECB_02607	snp_type=intergenic
SNP	821	583	REL606	2847052	G	aa_new_seq=A	aa_position=10	aa_ref_seq=V	codon_new_seq=GCT	codon_position=2	codon_ref_seq=GTT	gene_list=recD	gene_name=recD	gene_position=29	gene_product=exonuclease V (RecBCD complex), alpha chain	gene_strand=<	locus_tag=ECB_02667	snp_type=nonsynonymous
MOB	789	40,25	REL606	2877313	IS150	1	3	gene_list=kduD	gene_name=kduD	gene_position=coding (565-567/762 nt)	gene_product=2-deoxy-D-gluconate 3-dehydrogenase	gene_strand=<	locus_tag=ECB_02690
SNP	822	597	REL606	3093020	G	aa_new_seq=L	aa_position=74	aa_ref_seq=F	codon_new_seq=TTG	codon_position=3	codon_ref_seq=TTT	gene_list=yqhH	gene_name=yqhH	gene_position=222	gene_product=predicted outer membrane lipoprotein	gene_strand=>	locus_tag=ECB_02887	snp_type=nonsynonymous
SNP	823	598	REL606	3124208	A	aa_new_seq=V	aa_position=247	aa_ref_seq=V	codon_new_seq=GTA	codon_position=3	codon_ref_seq=GTG	gene_list=yqiI	gene_name=yqiI	gene_position=741	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_02918	snp_type=synonymous
SNP	824	601	REL606	3271926	C	aa_new_seq=G	aa_position=38	aa_ref_seq=D	codon_new_seq=GGC	codon_position=2	codon_ref_seq=GAC	gene_list=yrbA	gene_name=yrbA	gene_position=113	gene_product=predicted DNA-binding transcriptional regulator	gene_strand=<	locus_tag=ECB_03055	snp_type=nonsynonymous
SNP	825	602	REL606	3308106	A	aa_new_seq=A	aa_position=6	aa_ref_seq=A	codon_new_seq=GCA	codon_position=3	codon_ref_seq=GCG	gene_list=yhcB	gene_name=yhcB	gene_position=18	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_03093	snp_type=synonymous
SNP	826	605	REL606	3338108	G	gene_name=prmA/yhdG	gene_position=intergenic (+266/-63)	gene_product=ribosomal protein L11 methyltransferase/tRNA-dihydrouridine synthase B	locus_tag=ECB_03117/ECB_03118	snp_type=intergenic
SNP	827	618	REL606	3409316	G	aa_new_seq=S	aa_position=41	aa_ref_seq=S	codon_new_seq=TCG	codon_position=3	codon_ref_seq=TCT	gene_list=yheS	gene_name=yheS	gene_position=123	gene_product=fused predicted transporter subunits of ABC superfamily: ATP-binding components	gene_strand=>	locus_tag=ECB_03203	snp_type=synonymous
SNP	828	619	REL606	3414095	C	aa_new_seq=S	aa_position=24	aa_ref_seq=Y	codon_new_seq=TCC	codon_position=2	codon_ref_seq=TAC	gene_list=crp	gene_name=crp	gene_position=71	gene_product=DNA-binding transcriptional dual regulator	gene_strand=>	locus_tag=ECB_03208	snp_type=nonsynonymous
DEL	766	621,58	REL606	3482398	25	gene_list=malT	gene_name=malT	gene_position=coding (714-738/2706 nt)	gene_product=transcriptional regulator MalT	gene_strand=>	locus_tag=ECB_03270
MOB	790	74,21	REL606	3493824	IS150	1	3	gene_list=ECB_03279	gene_name=ECB_03279	gene_position=coding (104-106/993 nt)	gene_product=hypothetical protein	gene_strand=<	locus_tag=ECB_03279
DEL	767	686,19	REL606	3894997	6138	gene_name=rbsD–[yieO]	gene_product=rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]	locus_tag=[ECB_03634]–[ECB_03640]	mediated=IS150
MOB	791	5,11	REL606	3981782	IS150	-1	3	gene_list=ECB_03710	gene_name=ECB_03710	gene_position=coding (249-251/1224 nt)	gene_product=putative permease	gene_strand=<	locus_tag=ECB_03710
INS	829	703	REL606	4097093	C	gene_list=glpF	gene_name=glpF	gene_position=coding (480/846 nt)	gene_product=glycerol facilitator	gene_strand=<	locus_tag=ECB_03812
SNP	830	704	REL606	4101091	C	aa_new_seq=G	aa_position=47	aa_ref_seq=E	codon_new_seq=GGA	codon_position=2	codon_ref_seq=GAA	gene_list=hslU	gene_name=hslU	gene_position=140	gene_product=ATP-dependent protease ATP-binding subunit	gene_strand=<	locus_tag=ECB_03816	snp_type=nonsynonymous
SNP	831	705	REL606	4133104	A	aa_new_seq=R	aa_position=34	aa_ref_seq=R	codon_new_seq=CGT	codon_position=3	codon_ref_seq=CGC	gene_list=ppc	gene_name=ppc	gene_position=102	gene_product=phosphoenolpyruvate carboxylase	gene_strand=<	locus_tag=ECB_03841	snp_type=synonymous
SNP	832	730	REL606	4201980	A	aa_new_seq=S	aa_position=194	aa_ref_seq=P	codon_new_seq=TCT	codon_position=1	codon_ref_seq=CCT	gene_list=iclR	gene_name=iclR	gene_position=580	gene_product=DNA-binding transcriptional repressor	gene_strand=<	locus_tag=ECB_03890	snp_type=nonsynonymous
DEL	768	731,22	REL606	4205069	5	gene_list=metH	gene_name=metH	gene_position=coding (2311-2315/3684 nt)	gene_product=B12-dependent methionine synthase	gene_strand=>	locus_tag=ECB_03891
SNP	833	732	REL606	4224464	C	aa_new_seq=R	aa_position=296	aa_ref_seq=S	codon_new_seq=AGG	codon_position=3	codon_ref_seq=AGT	gene_list=malE	gene_name=malE	gene_position=888	gene_product=maltose ABC transporter periplasmic protein	gene_strand=<	locus_tag=ECB_03906	snp_type=nonsynonymous
SNP	834	733	REL606	4262916	G	aa_new_seq=S	aa_position=307	aa_ref_seq=Y	codon_new_seq=TCC	codon_position=2	codon_ref_seq=TAC	gene_list=actP	gene_name=actP	gene_position=920	gene_product=acetate permease	gene_strand=<	locus_tag=ECB_03939	snp_type=nonsynonymous
SNP	835	744	REL606	4384430	A	aa_new_seq=Y	aa_position=29	aa_ref_seq=S	codon_new_seq=TAT	codon_position=2	codon_ref_seq=TCT	gene_list=yjeB	gene_name=yjeB	gene_position=86	gene_product=predicted DNA-binding transcriptional regulator	gene_strand=>	locus_tag=ECB_04045	snp_type=nonsynonymous
MOB	792	26,29	REL606	4415710	IS150	-1	3	gene_list=cycA	gene_name=cycA	gene_position=coding (848-850/1413 nt)	gene_product=D-alanine/D-serine/glycine transporter	gene_strand=>	locus_tag=ECB_04080
MOB	793	36,4	REL606	4462655	IS1	1	9	gene_name=yjgM/yjgN	gene_position=intergenic (-85/-100)	gene_product=predicted acetyltransferase/conserved inner membrane protein	locus_tag=ECB_04122/ECB_04123	snp_type=intergenic
SNP	836	756	REL606	4559548	T	aa_new_seq=E	aa_position=492	aa_ref_seq=E	codon_new_seq=GAA	codon_position=3	codon_ref_seq=GAG	gene_list=hsdM	gene_name=hsdM	gene_position=1476	gene_product=DNA methylase M	gene_strand=<	locus_tag=ECB_04215	snp_type=synonymous
SNP	837	762	REL606	4608703	T	aa_new_seq=V	aa_position=414	aa_ref_seq=A	codon_new_seq=GTG	codon_position=2	codon_ref_seq=GCG	gene_list=deoA	gene_name=deoA	gene_position=1241	gene_product=thymidine phosphorylase	gene_strand=>	locus_tag=ECB_04258	snp_type=nonsynonymous
MOB	794	77,53	REL606	4615673	IS150	1	4	gene_list=nadR	gene_name=nadR	gene_position=coding (145-148/1233 nt)	gene_product=nicotinamide-nucleotide adenylyltransferase	gene_strand=>	locus_tag=ECB_04266
SNP	838	763	REL606	4628460	G	aa_new_seq=P	aa_position=3	aa_ref_seq=T	codon_new_seq=CCC	codon_position=1	codon_ref_seq=ACC	gene_list=arcA	gene_name=arcA	gene_position=7	gene_product=DNA-binding response regulator in two-component regulatory system with ArcB or CpxA	gene_strand=<	locus_tag=ECB_04277	snp_type=nonsynonymous
RA	224		REL606	70867	0	T	C	frequency=1	new_cov=24/22	quality=134.4	ref_cov=0/0	tot_cov=24/22
RA	225		REL606	88134	0	C	T	frequency=1	new_cov=5/14	quality=54.5	ref_cov=0/0	tot_cov=5/14
RA	226		REL606	101840	0	T	G	frequency=1	new_cov=26/13	quality=121.9	ref_cov=0/0	tot_cov=26/13
RA	227		REL606	132062	0	C	T	frequency=1	new_cov=8/26	quality=93.5	ref_cov=0/0	tot_cov=8/26
RA	228		REL606	226159	0	C	A	frequency=1	new_cov=7/11	quality=46.2	ref_cov=0/0	tot_cov=7/11
RA	261		REL606	433668	0	C	T	frequency=1	new_cov=12/14	quality=68.2	ref_cov=0/0	tot_cov=12/14
RA	263		REL606	490484	0	G	T	frequency=1	new_cov=5/13	quality=50.1	ref_cov=0/0	tot_cov=5/13
RA	270		REL606	549789	0	T	G	deleted=1	frequency=1	new_cov=0/1	quality=-4.6	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	271		REL606	549795	0	A	G	deleted=1	frequency=1	new_cov=0/1	quality=-3.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	272		REL606	555544	0	A	G	deleted=1	frequency=1	new_cov=0/1	quality=-5.3	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	273		REL606	555545	0	G	T	deleted=1	frequency=1	new_cov=0/1	quality=-5.8	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	274		REL606	555554	0	C	A	deleted=1	frequency=1	new_cov=0/1	quality=-5.6	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	275		REL606	555556	0	G	C	deleted=1	frequency=1	new_cov=0/1	quality=-5.8	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	303		REL606	588492	1	.	A	frequency=1	new_cov=14/9	quality=57.1	ref_cov=1/0	tot_cov=16/9
RA	304		REL606	588492	2	.	A	frequency=1	new_cov=15/9	quality=66.2	ref_cov=1/0	tot_cov=16/9
RA	313		REL606	666133	1	.	T	frequency=1	new_cov=11/8	quality=38.7	ref_cov=1/2	tot_cov=12/10
RA	365		REL606	796336	0	T	.	frequency=1	new_cov=3/12	quality=78.5	ref_cov=0/0	tot_cov=3/12
RA	366		REL606	901512	0	T	A	frequency=1	new_cov=11/19	quality=89.7	ref_cov=0/0	tot_cov=11/19
RA	386		REL606	1166129	0	T	C	frequency=1	new_cov=8/9	quality=45.4	ref_cov=0/0	tot_cov=8/9
RA	390		REL606	1207861	0	T	G	frequency=1	new_cov=15/17	quality=99.4	ref_cov=0/0	tot_cov=15/17
RA	426		REL606	1425369	0	G	A	frequency=1	new_cov=0/1	quality=-5.9	ref_cov=1/0	reject=EVALUE	tot_cov=1/1
RA	487		REL606	1686063	0	C	G	frequency=1	new_cov=0/1	quality=-5.5	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	489		REL606	1733865	0	G	T	frequency=1	new_cov=7/18	quality=66.3	ref_cov=0/0	tot_cov=7/18
RA	490		REL606	1746189	0	G	A	frequency=1	new_cov=17/15	quality=94.0	ref_cov=0/0	tot_cov=17/15
RA	491		REL606	1749019	0	G	A	frequency=1	new_cov=19/20	quality=109.2	ref_cov=0/0	tot_cov=19/20
RA	493		REL606	1879026	0	T	A	frequency=1	new_cov=13/21	quality=91.7	ref_cov=0/0	tot_cov=13/21
RA	494		REL606	1902276	1	.	T	frequency=1	new_cov=16/6	quality=60.7	ref_cov=0/0	tot_cov=16/6
RA	495		REL606	1930575	0	C	A	frequency=1	new_cov=18/11	quality=87.6	ref_cov=0/0	tot_cov=18/11
RA	504		REL606	2002475	0	C	A	frequency=1	new_cov=9/23	quality=94.8	ref_cov=0/0	tot_cov=9/23
RA	530		REL606	2219638	0	T	G	frequency=1	new_cov=22/12	quality=98.3	ref_cov=0/0	tot_cov=22/12
RA	536		REL606	2323543	0	T	A	frequency=1	new_cov=25/19	quality=132.2	ref_cov=0/0	tot_cov=25/19
RA	555		REL606	2614425	0	C	A	frequency=1	new_cov=13/18	quality=85.4	ref_cov=0/0	tot_cov=14/18
RA	557		REL606	2650889	1	.	T	frequency=1	new_cov=0/2	quality=-4.6	ref_cov=0/0	reject=EVALUE	tot_cov=0/2
RA	558		REL606	2650892	0	T	G	frequency=1	new_cov=0/1	quality=-6.1	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	563		REL606	2702361	0	G	A	frequency=1	new_cov=14/12	quality=72.7	ref_cov=0/0	tot_cov=14/12
RA	571		REL606	2775038	0	A	.	frequency=1	new_cov=1/0	quality=-1.5	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	572		REL606	2775046	0	T	C	frequency=1	new_cov=1/0	quality=-3.7	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	573		REL606	2775396	0	C	.	frequency=1	new_cov=1/0	quality=-0.9	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	574		REL606	2775415	0	G	T	frequency=1	new_cov=1/0	quality=-4.8	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	575		REL606	2775418	0	A	C	frequency=1	new_cov=1/0	quality=-5.9	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	576		REL606	2775485	0	T	.	frequency=1	new_cov=1/0	quality=-0.9	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	578		REL606	2775879	0	G	.	frequency=1	new_cov=9/9	quality=95.7	ref_cov=0/0	tot_cov=9/9
RA	583		REL606	2847052	0	A	G	frequency=1	new_cov=21/19	quality=107.0	ref_cov=0/0	tot_cov=22/20
RA	588		REL606	3009968	0	C	T	deleted=1	frequency=1	new_cov=1/0	quality=-3.3	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	589		REL606	3009974	0	T	C	deleted=1	frequency=1	new_cov=1/0	quality=-3.4	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	590		REL606	3009981	0	T	G	deleted=1	frequency=1	new_cov=1/0	quality=-3.6	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	591		REL606	3010497	0	A	C	deleted=1	frequency=1	new_cov=1/0	quality=-3.1	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	592		REL606	3010512	0	T	G	deleted=1	frequency=1	new_cov=1/0	quality=-6.2	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	597		REL606	3093020	0	T	G	frequency=1	new_cov=7/17	quality=70.1	ref_cov=0/0	tot_cov=7/17
RA	598		REL606	3124208	0	G	A	frequency=1	new_cov=7/11	quality=52.1	ref_cov=0/0	tot_cov=7/11
RA	601		REL606	3271926	0	T	C	frequency=1	new_cov=20/14	quality=104.2	ref_cov=0/0	tot_cov=20/14
RA	602		REL606	3308106	0	G	A	frequency=1	new_cov=13/27	quality=105.5	ref_cov=1/0	tot_cov=14/27
RA	605		REL606	3338108	0	T	G	frequency=1	new_cov=18/8	quality=78.1	ref_cov=0/0	tot_cov=18/8
RA	618		REL606	3409316	0	T	G	frequency=1	new_cov=16/10	quality=70.2	ref_cov=0/0	tot_cov=16/10
RA	619		REL606	3414095	0	A	C	frequency=1	new_cov=21/8	quality=87.6	ref_cov=0/0	tot_cov=21/8
RA	703		REL606	4097093	1	.	C	frequency=1	new_cov=9/13	quality=55.9	ref_cov=0/1	tot_cov=9/14
RA	704		REL606	4101091	0	T	C	frequency=1	new_cov=13/12	quality=70.1	ref_cov=0/0	tot_cov=13/12
RA	705		REL606	4133104	0	G	A	frequency=1	new_cov=14/19	quality=87.6	ref_cov=0/1	tot_cov=14/20
RA	716		REL606	4156438	0	A	.	frequency=1	new_cov=1/0	quality=-1.3	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	730		REL606	4201980	0	G	A	frequency=1	new_cov=13/12	quality=73.3	ref_cov=0/0	tot_cov=13/12
RA	732		REL606	4224464	0	A	C	frequency=1	new_cov=17/12	quality=81.1	ref_cov=0/0	tot_cov=17/13
RA	733		REL606	4262916	0	T	G	frequency=1	new_cov=14/5	quality=53.7	ref_cov=0/0	tot_cov=14/5
RA	744		REL606	4384430	0	C	A	frequency=1	new_cov=19/12	quality=90.9	ref_cov=0/0	tot_cov=19/12
RA	756		REL606	4559548	0	C	T	frequency=1	new_cov=4/8	quality=30.7	ref_cov=0/0	tot_cov=4/8
RA	762		REL606	4608703	0	C	T	frequency=1	new_cov=7/9	quality=35.2	ref_cov=0/0	tot_cov=7/9
RA	763		REL606	4628460	0	T	G	frequency=1	new_cov=26/17	quality=133.8	ref_cov=0/1	tot_cov=26/18
MC	216		REL606	16975	16988	0	0	left_inside_cov=0	left_outside_cov=29	right_inside_cov=0	right_outside_cov=41
MC	277		REL606	546952	555851	746	292	left_inside_cov=7	left_outside_cov=9	right_inside_cov=8	right_outside_cov=9
MC	308		REL606	590350	601095	119	0	left_inside_cov=8	left_outside_cov=11	right_inside_cov=0	right_outside_cov=57
MC	399		REL606	1269943	1270670	88	0	left_inside_cov=8	left_outside_cov=10	right_inside_cov=8	right_outside_cov=9
MC	407		REL606	1353847	1354424	0	0	left_inside_cov=0	left_outside_cov=34	right_inside_cov=0	right_outside_cov=26
MC	484		REL606	1607941	1616706	1235	4729	left_inside_cov=8	left_outside_cov=9	right_inside_cov=6	right_outside_cov=9
MC	511		REL606	2034352	2053848	744	0	left_inside_cov=8	left_outside_cov=10	right_inside_cov=0	right_outside_cov=26
MC	522		REL606	2086857	2093026	76	0	left_inside_cov=8	left_outside_cov=9	right_inside_cov=0	right_outside_cov=44
MC	538		REL606	2397529	2397542	0	0	left_inside_cov=0	left_outside_cov=36	right_inside_cov=0	right_outside_cov=50
MC	582		REL606	2842029	2842298	57	183	left_inside_cov=7	left_outside_cov=9	right_inside_cov=8	right_outside_cov=9
MC	594		REL606	2999588	3048504	0	0	left_inside_cov=8	left_outside_cov=9	right_inside_cov=8	right_outside_cov=10
MC	621		REL606	3482398	3482422	0	0	left_inside_cov=0	left_outside_cov=30	right_inside_cov=0	right_outside_cov=30
MC	626		REL606	3551322	3552237	74	839	left_inside_cov=8	left_outside_cov=9	right_inside_cov=8	right_outside_cov=10
MC	686		REL606	3893584	3901134	1410	0	left_inside_cov=8	left_outside_cov=13	right_inside_cov=0	right_outside_cov=50
MC	731		REL606	4205069	4205073	0	0	left_inside_cov=0	left_outside_cov=48	right_inside_cov=0	right_outside_cov=50
MC	738		REL606	4275714	4333231	0	0	left_inside_cov=7	left_outside_cov=10	right_inside_cov=8	right_outside_cov=11
MC	754		REL606	4559539	4559543	0	0	left_inside_cov=0	left_outside_cov=11	right_inside_cov=0	right_outside_cov=12
JC	65		REL606	1	1	REL606	4629812	-1	0	alignment_overlap=0	circular_chromosome=1	coverage_minus=14	coverage_plus=12	flanking_left=36	flanking_right=36	key=REL606__1__1__REL606__4629812__0__0____36__36__0__0	max_left=26	max_left_minus=26	max_left_plus=26	max_min_left=17	max_min_left_minus=17	max_min_left_plus=14	max_min_right=18	max_min_right_minus=16	max_min_right_plus=18	max_right=35	max_right_minus=35	max_right_plus=33	min_overlap_score=263	pos_hash_score=22	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=26	total_reads=26
JC	152		REL606	5650	-1	REL606	830207	1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__5640__0__REL606__830207__1__10____36__36__1__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=6	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=10	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	78		REL606	7216	1	REL606	4608712	1	0	alignment_overlap=6	coverage_minus=11	coverage_plus=7	flanking_left=36	flanking_right=36	key=REL606__7216__1__REL606__4608706__1__6____36__36__0__0	max_left=9	max_left_minus=9	max_left_plus=9	max_min_left=9	max_min_left_minus=9	max_min_left_plus=9	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=29	max_right_minus=29	max_right_plus=29	min_overlap_score=111	pos_hash_score=13	reject=NJ	side_1_annotate_key=gene	side_1_overlap=6	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=18	total_reads=18
JC	93		REL606	9904	-1	REL606	732900	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=5	flanking_left=36	flanking_right=36	key=REL606__9904__0__REL606__732897__1__3____36__36__0__0	max_left=12	max_left_minus=0	max_left_plus=12	max_min_left=12	max_min_left_minus=0	max_min_left_plus=12	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=29	max_right_minus=0	max_right_plus=29	min_overlap_score=37	pos_hash_score=4	reject=NJ	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=5	total_reads=5
JC	13		REL606	15386	1	REL606	962005	1	0	alignment_overlap=3	coverage_minus=12	coverage_plus=13	flanking_left=36	flanking_right=36	key=REL606__15386__1__REL606__962002__1__3____36__36__1__0	max_left=30	max_left_minus=30	max_left_plus=24	max_min_left=15	max_min_left_minus=13	max_min_left_plus=15	max_min_right=15	max_min_right_minus=15	max_min_right_plus=14	max_right=32	max_right_minus=32	max_right_plus=32	min_overlap_score=185	pos_hash_score=19	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=25	total_reads=55
JC	16		REL606	15498	1	REL606	588496	1	0	alignment_overlap=2	coverage_minus=25	coverage_plus=14	flanking_left=36	flanking_right=36	key=REL606__15498__1__REL606__588494__1__2____36__36__1__1	max_left=32	max_left_minus=30	max_left_plus=32	max_min_left=16	max_min_left_minus=16	max_min_left_plus=14	max_min_right=17	max_min_right_minus=17	max_min_right_plus=16	max_right=33	max_right_minus=33	max_right_plus=30	min_overlap_score=362	pos_hash_score=27	side_1_annotate_key=repeat	side_1_overlap=2	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=39	total_reads=51
JC	33		REL606	15501	-1	REL606	666130	-1	0	alignment_overlap=1	coverage_minus=19	coverage_plus=17	flanking_left=36	flanking_right=36	key=REL606__15501__0__REL606__666131__0__1____36__36__1__1	max_left=34	max_left_minus=34	max_left_plus=34	max_min_left=16	max_min_left_minus=14	max_min_left_plus=16	max_min_right=17	max_min_right_minus=17	max_min_right_plus=17	max_right=34	max_right_minus=34	max_right_plus=32	min_overlap_score=288	pos_hash_score=30	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=36	total_reads=39
JC	15		REL606	16728	-1	REL606	962010	-1	0	alignment_overlap=3	coverage_minus=8	coverage_plus=15	flanking_left=36	flanking_right=36	key=REL606__16728__0__REL606__962013__0__3____36__36__0__1	max_left=32	max_left_minus=32	max_left_plus=32	max_min_left=16	max_min_left_minus=16	max_min_left_plus=16	max_min_right=13	max_min_right_minus=13	max_min_right_plus=10	max_right=32	max_right_minus=32	max_right_plus=32	min_overlap_score=164	pos_hash_score=19	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=23	total_reads=51
JC	17		REL606	16728	-1	REL606	2713428	1	0	alignment_overlap=5	coverage_minus=15	coverage_plus=21	flanking_left=36	flanking_right=36	key=REL606__16730__0__REL606__2713425__1__5____36__36__1__0	max_left=30	max_left_minus=28	max_left_plus=30	max_min_left=15	max_min_left_minus=15	max_min_left_plus=15	max_min_right=15	max_min_right_minus=15	max_min_right_plus=15	max_right=30	max_right_minus=30	max_right_plus=30	min_overlap_score=313	pos_hash_score=26	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=36	total_reads=50
JC	56		REL606	16974	-1	REL606	2774435	1	0	alignment_overlap=5	coverage_minus=8	coverage_plus=18	flanking_left=36	flanking_right=36	key=REL606__16976__0__REL606__2774432__1__5____36__36__0__1	max_left=29	max_left_minus=29	max_left_plus=29	max_min_left=14	max_min_left_minus=10	max_min_left_plus=14	max_min_right=14	max_min_right_minus=14	max_min_right_plus=14	max_right=28	max_right_minus=27	max_right_plus=28	min_overlap_score=220	pos_hash_score=22	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=2	side_2_redundant=1	total_non_overlap_reads=26	total_reads=31
JC	31		REL606	16989	1	REL606	588495	1	0	alignment_overlap=0	coverage_minus=23	coverage_plus=16	flanking_left=36	flanking_right=36	key=REL606__16989__1__REL606__588495__1__0____36__36__0__1	max_left=35	max_left_minus=32	max_left_plus=35	max_min_left=16	max_min_left_minus=16	max_min_left_plus=16	max_min_right=18	max_min_right_minus=18	max_min_right_plus=16	max_right=33	max_right_minus=32	max_right_plus=33	min_overlap_score=368	pos_hash_score=28	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=39	total_reads=39
JC	206		REL606	22280	1	REL606	3424388	-1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__22280__1__REL606__3424388__0__-3__ACA__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=ACA
JC	3		REL606	23673	1	REL606	2774436	1	0	alignment_overlap=3	coverage_minus=12	coverage_plus=16	flanking_left=36	flanking_right=36	key=REL606__23673__1__REL606__2774433__1__3____36__36__1__1	max_left=32	max_left_minus=32	max_left_plus=29	max_min_left=16	max_min_left_minus=16	max_min_left_plus=14	max_min_right=15	max_min_right_minus=13	max_min_right_plus=15	max_right=32	max_right_minus=32	max_right_plus=32	min_overlap_score=214	pos_hash_score=25	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=28	total_reads=143
JC	64		REL606	23674	1	REL606	666129	-1	0	alignment_overlap=1	coverage_minus=12	coverage_plus=15	flanking_left=36	flanking_right=36	key=REL606__23674__1__REL606__666130__0__1____36__36__1__1	max_left=34	max_left_minus=34	max_left_plus=33	max_min_left=14	max_min_left_minus=14	max_min_left_plus=13	max_min_right=17	max_min_right_minus=17	max_min_right_plus=16	max_right=31	max_right_minus=31	max_right_plus=30	min_overlap_score=258	pos_hash_score=20	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=27	total_reads=27
JC	1		REL606	23679	-1	REL606	588497	1	0	alignment_overlap=2	coverage_minus=50	coverage_plus=19	flanking_left=36	flanking_right=36	key=REL606__23679__0__REL606__588495__1__2____36__36__1__1	max_left=33	max_left_minus=33	max_left_plus=32	max_min_left=16	max_min_left_minus=16	max_min_left_plus=15	max_min_right=17	max_min_right_minus=16	max_min_right_plus=17	max_right=32	max_right_minus=32	max_right_plus=32	min_overlap_score=624	pos_hash_score=37	side_1_annotate_key=repeat	side_1_overlap=2	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=69	total_reads=201
JC	2		REL606	23729	-1	REL606	666128	-1	0	alignment_overlap=3	coverage_minus=15	coverage_plus=16	flanking_left=36	flanking_right=36	key=REL606__23729__0__REL606__666131__0__3____36__36__1__1	max_left=32	max_left_minus=32	max_left_plus=31	max_min_left=14	max_min_left_minus=12	max_min_left_plus=14	max_min_right=15	max_min_right_minus=15	max_min_right_plus=8	max_right=32	max_right_minus=32	max_right_plus=30	min_overlap_score=190	pos_hash_score=23	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=31	total_reads=183
JC	32		REL606	24058	-1	REL606	1915406	1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=11	flanking_left=36	flanking_right=36	key=REL606__24058__0__REL606__1915406__1__0____36__36__1__0	max_left=31	max_left_minus=20	max_left_plus=31	max_min_left=17	max_min_left_minus=17	max_min_left_plus=16	max_min_right=16	max_min_right_minus=16	max_min_right_plus=11	max_right=35	max_right_minus=31	max_right_plus=35	min_overlap_score=287	pos_hash_score=21	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=27	total_reads=39
JC	128		REL606	29858	1	REL606	3813653	1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__29858__1__REL606__3813645__1__8____36__36__0__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=6	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	122		REL606	38854	1	REL606	916478	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__38854__1__REL606__916478__0__0____36__36__0__0	max_left=25	max_left_minus=0	max_left_plus=25	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=9	max_min_right_minus=0	max_min_right_plus=9	max_right=9	max_right_minus=0	max_right_plus=9	min_overlap_score=9	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	116		REL606	38878	-1	REL606	1001454	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__38878__0__REL606__1001464__0__10____36__36__0__0	max_left=2	max_left_minus=0	max_left_plus=2	max_min_left=2	max_min_left_minus=0	max_min_left_plus=2	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=21	max_right_minus=0	max_right_plus=21	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	191		REL606	60998	-1	REL606	3764084	1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__60998__0__REL606__3764084__1__-4__AAAG__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AAAG
JC	113		REL606	62424	1	REL606	312590	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__62424__1__REL606__312589__1__1____36__36__0__0	max_left=4	max_left_minus=4	max_left_plus=0	max_min_left=4	max_min_left_minus=4	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=31	max_right_minus=31	max_right_plus=0	min_overlap_score=4	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	125		REL606	74939	1	REL606	2445669	-1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__74939__1__REL606__2445673__0__4____36__36__0__0	max_left=31	max_left_minus=31	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=4	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	99		REL606	77872	1	REL606	1644721	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__77872__1__REL606__1644721__0__0____36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=17	max_min_left_minus=0	max_min_left_plus=17	max_min_right=18	max_min_right_minus=0	max_min_right_plus=18	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=51	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3
JC	104		REL606	104038	1	REL606	4087059	-1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__104038__1__REL606__4087068__0__9____36__36__0__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=15	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3
JC	163		REL606	113441	-1	REL606	1034236	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__113441__0__REL606__1034233__1__3____36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	195		REL606	114242	1	REL606	114427	1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__114242__1__REL606__114427__1__-1__A__36__36__0__0	max_left=8	max_left_minus=0	max_left_plus=8	max_min_left=8	max_min_left_minus=0	max_min_left_plus=8	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=27	max_right_minus=0	max_right_plus=27	min_overlap_score=8	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=A
JC	146		REL606	118226	1	REL606	379235	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__118226__1__REL606__379235__0__-1__G__36__36__0__0	max_left=20	max_left_minus=0	max_left_plus=20	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	168		REL606	119473	-1	REL606	2170658	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__119473__0__REL606__2170658__0__0____36__36__0__0	max_left=20	max_left_minus=0	max_left_plus=20	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	114		REL606	122564	-1	REL606	1721285	1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__122564__0__REL606__1721285__1__-2__GC__36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GC
JC	85		REL606	128319	1	REL606	4176550	1	0	alignment_overlap=9	coverage_minus=8	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__128319__1__REL606__4176541__1__9____36__36__0__0	max_left=25	max_left_minus=25	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=5	max_min_right_minus=5	max_min_right_plus=0	max_right=5	max_right_minus=5	max_right_plus=0	min_overlap_score=36	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=8	total_reads=8
JC	175		REL606	130640	-1	REL606	1746122	1	0	alignment_overlap=18	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__130640__0__REL606__1746104__1__18____36__36__0__0	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=18	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	178		REL606	141593	1	REL606	3084963	1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__141593__1__REL606__3084956__1__7____36__36__0__0	max_left=26	max_left_minus=26	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=3	max_min_right_minus=3	max_min_right_plus=0	max_right=3	max_right_minus=3	max_right_plus=0	min_overlap_score=3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	59		REL606	146104	-1	REL606	2775877	-1	-3	alignment_overlap=-3	coverage_minus=13	coverage_plus=16	flanking_left=36	flanking_right=36	key=REL606__146104__0__REL606__2775877__0__-3__ATG__36__36__0__1	max_left=34	max_left_minus=34	max_left_plus=31	max_min_left=15	max_min_left_minus=6	max_min_left_plus=15	max_min_right=16	max_min_right_minus=12	max_min_right_plus=16	max_right=34	max_right_minus=34	max_right_plus=30	min_overlap_score=189	pos_hash_score=24	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=29	total_reads=29	unique_read_sequence=ATG
JC	62		REL606	146104	1	REL606	3652533	-1	0	alignment_overlap=3	coverage_minus=13	coverage_plus=12	flanking_left=36	flanking_right=36	key=REL606__146102__1__REL606__3652534__0__3____36__36__0__1	max_left=32	max_left_minus=32	max_left_plus=32	max_min_left=15	max_min_left_minus=15	max_min_left_plus=13	max_min_right=16	max_min_right_minus=16	max_min_right_plus=15	max_right=31	max_right_minus=31	max_right_plus=31	min_overlap_score=211	pos_hash_score=22	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=2	side_2_redundant=1	total_non_overlap_reads=25	total_reads=29
JC	149		REL606	146104	-1	REL606	588495	1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__146104__0__REL606__588495__1__-3__GTA__36__36__0__1	max_left=2	max_left_minus=0	max_left_plus=2	max_min_left=2	max_min_left_minus=0	max_min_left_plus=2	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=31	max_right_minus=0	max_right_plus=31	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GTA
JC	179		REL606	164711	-1	REL606	498392	1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__164711__0__REL606__498392__1__-4__GGCT__36__36__0__1	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GGCT
JC	131		REL606	218939	1	REL606	4443777	-1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__218939__1__REL606__4443778__0__1____36__36__0__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=13	max_min_right_minus=13	max_min_right_plus=0	max_right=13	max_right_minus=13	max_right_plus=0	min_overlap_score=13	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	8		REL606	241692	1	REL606	3651091	1	0	alignment_overlap=2	coverage_minus=22	coverage_plus=19	flanking_left=36	flanking_right=36	key=REL606__241692__1__REL606__3651089__1__2____36__36__1__1	max_left=33	max_left_minus=33	max_left_plus=33	max_min_left=16	max_min_left_minus=16	max_min_left_plus=16	max_min_right=16	max_min_right_minus=13	max_min_right_plus=16	max_right=33	max_right_minus=33	max_right_plus=32	min_overlap_score=334	pos_hash_score=28	side_1_annotate_key=repeat	side_1_overlap=2	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=41	total_reads=62
JC	184		REL606	248736	-1	REL606	2583281	-1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__248734__0__REL606__2583281__0__2____36__36__1__0	max_left=28	max_left_minus=0	max_left_plus=28	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=5	max_min_right_minus=0	max_min_right_plus=5	max_right=5	max_right_minus=0	max_right_plus=5	min_overlap_score=5	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	166		REL606	250310	1	REL606	1307914	-1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__250310__1__REL606__1307914__0__-3__TTC__36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TTC
JC	180		REL606	260784	1	REL606	330233	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__260784__1__REL606__330232__1__1____36__36__0__1	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=17	max_min_left_minus=0	max_min_left_plus=17	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	110		REL606	285333	-1	REL606	3154801	-1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__285333__0__REL606__3154801__0__-1__G__36__36__0__0	max_left=25	max_left_minus=25	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=17	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=27	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=G
JC	100		REL606	302845	1	REL606	4368505	1	-1	alignment_overlap=-1	coverage_minus=3	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__302845__1__REL606__4368505__1__-1__T__36__36__0__0	max_left=29	max_left_minus=29	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=31	pos_hash_score=3	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3	unique_read_sequence=T
JC	89		REL606	305624	1	REL606	1088978	-1	0	alignment_overlap=6	coverage_minus=0	coverage_plus=6	flanking_left=36	flanking_right=36	key=REL606__305624__1__REL606__1088984__0__6____36__36__0__0	max_left=14	max_left_minus=0	max_left_plus=14	max_min_left=11	max_min_left_minus=0	max_min_left_plus=11	max_min_right=12	max_min_right_minus=0	max_min_right_plus=12	max_right=25	max_right_minus=0	max_right_plus=25	min_overlap_score=47	pos_hash_score=4	reject=NJ	side_1_annotate_key=gene	side_1_overlap=6	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=6	total_reads=6
JC	134		REL606	306857	1	REL606	2229078	-1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__306857__1__REL606__2229080__0__2____36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	186		REL606	311740	1	REL606	1119188	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__311740__1__REL606__1119188__0__-4__CCGG__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CCGG
JC	204		REL606	312590	1	REL606	2583278	-1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__312590__1__REL606__2583281__0__3____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	94		REL606	312594	1	REL606	2583282	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=4	flanking_left=36	flanking_right=36	key=REL606__312594__1__REL606__2583282__0__0____36__36__0__0	max_left=22	max_left_minus=0	max_left_plus=22	max_min_left=17	max_min_left_minus=0	max_min_left_plus=17	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=61	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=4	total_reads=4
JC	109		REL606	315982	1	REL606	4068782	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__315982__1__REL606__4068782__1__0____36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=11	max_min_left_minus=0	max_min_left_plus=11	max_min_right=17	max_min_right_minus=0	max_min_right_plus=17	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=28	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	151		REL606	321918	1	REL606	1142373	-1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__321918__1__REL606__1142373__0__-2__TT__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TT
JC	127		REL606	322250	1	REL606	322621	-1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__322250__1__REL606__322622__0__1____36__36__0__0	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=34	max_right_minus=0	max_right_plus=34	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	182		REL606	330032	1	REL606	330430	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__330032__1__REL606__330430__0__-1__G__36__36__0__0	max_left=26	max_left_minus=26	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=3	max_min_right_minus=3	max_min_right_plus=0	max_right=3	max_right_minus=3	max_right_plus=0	min_overlap_score=3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	60		REL606	336055	1	REL606	3651091	1	0	alignment_overlap=1	coverage_minus=16	coverage_plus=11	flanking_left=36	flanking_right=36	key=REL606__336055__1__REL606__3651090__1__1____36__36__0__1	max_left=34	max_left_minus=31	max_left_plus=34	max_min_left=14	max_min_left_minus=13	max_min_left_plus=14	max_min_right=16	max_min_right_minus=13	max_min_right_plus=16	max_right=27	max_right_minus=26	max_right_plus=27	min_overlap_score=235	pos_hash_score=19	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=27	total_reads=29
JC	71		REL606	336057	-1	REL606	2774435	1	0	alignment_overlap=2	coverage_minus=13	coverage_plus=10	flanking_left=36	flanking_right=36	key=REL606__336058__0__REL606__2774434__1__2____36__36__0__1	max_left=33	max_left_minus=33	max_left_plus=21	max_min_left=15	max_min_left_minus=15	max_min_left_plus=15	max_min_right=17	max_min_right_minus=17	max_min_right_plus=17	max_right=30	max_right_minus=30	max_right_plus=30	min_overlap_score=225	pos_hash_score=19	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=1	side_2_redundant=1	total_non_overlap_reads=23	total_reads=25
JC	136		REL606	349677	1	REL606	3709027	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__349677__1__REL606__3709027__0__0____36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=20	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	95		REL606	363074	-1	REL606	558262	-1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=4	flanking_left=36	flanking_right=36	key=REL606__363074__0__REL606__558264__0__2____36__36__0__0	max_left=12	max_left_minus=0	max_left_plus=12	max_min_left=12	max_min_left_minus=0	max_min_left_plus=12	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=31	max_right_minus=0	max_right_plus=31	min_overlap_score=38	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=4	total_reads=4
JC	24		REL606	377516	-1	REL606	1915414	-1	0	alignment_overlap=1	coverage_minus=23	coverage_plus=22	flanking_left=36	flanking_right=36	key=REL606__377517__0__REL606__1915414__0__1____36__36__1__0	max_left=33	max_left_minus=32	max_left_plus=33	max_min_left=17	max_min_left_minus=16	max_min_left_plus=17	max_min_right=17	max_min_right_minus=16	max_min_right_plus=17	max_right=34	max_right_minus=34	max_right_plus=31	min_overlap_score=439	pos_hash_score=29	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=45	total_reads=48
JC	193		REL606	383838	-1	REL606	4593988	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__383838__0__REL606__4593988__0__-4__TCGT__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TCGT
JC	88		REL606	413918	-1	REL606	4141016	-1	0	alignment_overlap=7	coverage_minus=6	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__413918__0__REL606__4141023__0__7____36__36__0__0	max_left=27	max_left_minus=27	max_left_plus=0	max_min_left=7	max_min_left_minus=7	max_min_left_plus=0	max_min_right=13	max_min_right_minus=13	max_min_right_plus=0	max_right=20	max_right_minus=20	max_right_plus=0	min_overlap_score=39	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=6	total_reads=6
JC	119		REL606	443555	1	REL606	1392109	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__443555__1__REL606__1392109__0__0____36__36__0__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	164		REL606	472959	-1	REL606	3981914	-1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__472959__0__REL606__3981915__0__1____36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=17	max_min_left_minus=0	max_min_left_plus=17	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	209		REL606	485232	-1	REL606	875597	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__485232__0__REL606__875597__0__-2__TC__36__36__0__0	max_left=0	max_left_minus=0	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=34	max_right_minus=0	max_right_plus=34	min_overlap_score=-1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TC
JC	9		REL606	490481	1	REL606	666130	-1	0	alignment_overlap=1	coverage_minus=17	coverage_plus=8	flanking_left=36	flanking_right=36	key=REL606__490480__1__REL606__666130__0__1____36__36__0__1	max_left=34	max_left_minus=31	max_left_plus=34	max_min_left=17	max_min_left_minus=17	max_min_left_plus=13	max_min_right=16	max_min_right_minus=16	max_min_right_plus=13	max_right=33	max_right_minus=33	max_right_plus=33	min_overlap_score=207	pos_hash_score=16	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=1	side_2_redundant=1	total_non_overlap_reads=25	total_reads=61
JC	61		REL606	490483	-1	REL606	588495	1	0	alignment_overlap=1	coverage_minus=13	coverage_plus=15	flanking_left=36	flanking_right=36	key=REL606__490483__0__REL606__588494__1__1____36__36__0__1	max_left=34	max_left_minus=32	max_left_plus=34	max_min_left=17	max_min_left_minus=13	max_min_left_plus=17	max_min_right=17	max_min_right_minus=17	max_min_right_plus=17	max_right=30	max_right_minus=30	max_right_plus=29	min_overlap_score=272	pos_hash_score=21	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=28	total_reads=29
JC	169		REL606	512527	-1	REL606	2998172	1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__512527__0__REL606__2998172__1__-2__AT__36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=0	max_min_right_plus=17	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AT
JC	130		REL606	522743	-1	REL606	2896922	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__522743__0__REL606__2896922__0__-1__A__36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=17	max_min_left_minus=17	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=18	max_right_plus=0	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=A
JC	117		REL606	523622	-1	REL606	3685735	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__523622__0__REL606__3685735__1__0____36__36__0__1	max_left=3	max_left_minus=0	max_left_plus=3	max_min_left=3	max_min_left_minus=0	max_min_left_plus=3	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=33	max_right_minus=0	max_right_plus=33	min_overlap_score=3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	7		REL606	555825	1	REL606	2822954	-1	0	alignment_overlap=5	coverage_minus=26	coverage_plus=15	flanking_left=36	flanking_right=36	key=REL606__555825__1__REL606__2822959__0__5____36__36__1__1	max_left=30	max_left_minus=30	max_left_plus=28	max_min_left=15	max_min_left_minus=15	max_min_left_plus=14	max_min_right=15	max_min_right_minus=15	max_min_right_plus=10	max_right=30	max_right_minus=28	max_right_plus=30	min_overlap_score=357	pos_hash_score=29	side_1_annotate_key=repeat	side_1_overlap=5	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=41	total_reads=63
JC	132		REL606	566073	1	REL606	1080029	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__566073__1__REL606__1080029__0__-2__TC__36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=TC
JC	118		REL606	580723	1	REL606	3297797	1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__580723__1__REL606__3297797__1__-1__G__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=0	max_right_plus=20	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	6		REL606	588495	1	REL606	2019805	1	0	alignment_overlap=4	coverage_minus=8	coverage_plus=18	flanking_left=36	flanking_right=36	key=REL606__588494__1__REL606__2019802__1__4____36__36__1__0	max_left=31	max_left_minus=31	max_left_plus=31	max_min_left=15	max_min_left_minus=13	max_min_left_plus=15	max_min_right=16	max_min_right_minus=16	max_min_right_plus=11	max_right=29	max_right_minus=29	max_right_plus=24	min_overlap_score=187	pos_hash_score=18	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=26	total_reads=71
JC	20		REL606	588495	1	REL606	1462268	-1	0	alignment_overlap=2	coverage_minus=22	coverage_plus=23	flanking_left=36	flanking_right=36	key=REL606__588493__1__REL606__1462268__0__2____36__36__1__1	max_left=32	max_left_minus=32	max_left_plus=29	max_min_left=15	max_min_left_minus=15	max_min_left_plus=11	max_min_right=17	max_min_right_minus=17	max_min_right_plus=16	max_right=33	max_right_minus=33	max_right_plus=33	min_overlap_score=326	pos_hash_score=30	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=2	side_2_redundant=1	total_non_overlap_reads=45	total_reads=50
JC	26		REL606	588495	1	REL606	4415710	1	0	alignment_overlap=0	coverage_minus=20	coverage_plus=27	flanking_left=36	flanking_right=36	key=REL606__588495__1__REL606__4415710__1__0____36__36__1__0	max_left=33	max_left_minus=33	max_left_plus=33	max_min_left=17	max_min_left_minus=17	max_min_left_plus=17	max_min_right=18	max_min_right_minus=14	max_min_right_plus=18	max_right=35	max_right_minus=35	max_right_plus=35	min_overlap_score=469	pos_hash_score=33	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=47	total_reads=47
JC	28		REL606	588495	1	REL606	896465	-1	0	alignment_overlap=3	coverage_minus=20	coverage_plus=21	flanking_left=36	flanking_right=36	key=REL606__588494__1__REL606__896467__0__3____36__36__1__0	max_left=31	max_left_minus=31	max_left_plus=31	max_min_left=15	max_min_left_minus=15	max_min_left_plus=15	max_min_right=16	max_min_right_minus=16	max_min_right_plus=16	max_right=32	max_right_minus=32	max_right_plus=32	min_overlap_score=322	pos_hash_score=31	side_1_annotate_key=repeat	side_1_overlap=2	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=41	total_reads=42
JC	45		REL606	588495	1	REL606	1270660	1	0	alignment_overlap=2	coverage_minus=18	coverage_plus=13	flanking_left=36	flanking_right=36	key=REL606__588495__1__REL606__1270658__1__2____36__36__1__1	max_left=28	max_left_minus=28	max_left_plus=28	max_min_left=15	max_min_left_minus=15	max_min_left_plus=14	max_min_right=16	max_min_right_minus=16	max_min_right_plus=6	max_right=33	max_right_minus=29	max_right_plus=33	min_overlap_score=259	pos_hash_score=21	side_1_annotate_key=repeat	side_1_overlap=2	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=31	total_reads=34
JC	53		REL606	588495	1	REL606	4615676	-1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=17	flanking_left=36	flanking_right=36	key=REL606__588495__1__REL606__4615676__0__0____36__36__1__0	max_left=32	max_left_minus=30	max_left_plus=32	max_min_left=17	max_min_left_minus=16	max_min_left_plus=17	max_min_right=18	max_min_right_minus=18	max_min_right_plus=17	max_right=34	max_right_minus=32	max_right_plus=34	min_overlap_score=355	pos_hash_score=25	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=31	total_reads=31
JC	72		REL606	588495	1	REL606	1376383	1	0	alignment_overlap=2	coverage_minus=7	coverage_plus=15	flanking_left=36	flanking_right=36	key=REL606__588495__1__REL606__1376381__1__2____36__36__0__1	max_left=28	max_left_minus=28	max_left_plus=26	max_min_left=16	max_min_left_minus=13	max_min_left_plus=16	max_min_right=17	max_min_right_minus=10	max_min_right_plus=17	max_right=33	max_right_minus=25	max_right_plus=33	min_overlap_score=199	pos_hash_score=19	side_1_annotate_key=repeat	side_1_overlap=2	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=22	total_reads=25
JC	73		REL606	588495	1	REL606	3048489	1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=18	flanking_left=36	flanking_right=36	key=REL606__588495__1__REL606__3048489__1__0____36__36__0__1	max_left=30	max_left_minus=29	max_left_plus=30	max_min_left=17	max_min_left_minus=17	max_min_left_plus=14	max_min_right=17	max_min_right_minus=11	max_min_right_plus=17	max_right=35	max_right_minus=35	max_right_plus=35	min_overlap_score=208	pos_hash_score=20	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=24	total_reads=24
JC	202		REL606	588495	1	REL606	2591650	-1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__588495__1__REL606__2591650__0__-1__G__36__36__0__1	max_left=34	max_left_minus=34	max_left_plus=33	max_min_left=4	max_min_left_minus=0	max_min_left_plus=4	max_min_right=2	max_min_right_minus=2	max_min_right_plus=2	max_right=31	max_right_minus=2	max_right_plus=31	min_overlap_score=9	pos_hash_score=4	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=4	total_reads=1	unique_read_sequence=G
JC	27		REL606	590471	-1	REL606	2093027	1	0	alignment_overlap=1	coverage_minus=29	coverage_plus=14	flanking_left=36	flanking_right=36	key=REL606__590472__0__REL606__2093027__1__1____36__36__1__0	max_left=33	max_left_minus=33	max_left_plus=22	max_min_left=17	max_min_left_minus=14	max_min_left_plus=17	max_min_right=17	max_min_right_minus=17	max_min_right_plus=16	max_right=34	max_right_minus=34	max_right_plus=34	min_overlap_score=380	pos_hash_score=30	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=43	total_reads=44
JC	29		REL606	590471	-1	REL606	4415712	-1	0	alignment_overlap=2	coverage_minus=22	coverage_plus=19	flanking_left=36	flanking_right=36	key=REL606__590472__0__REL606__4415713__0__2____36__36__1__0	max_left=31	max_left_minus=29	max_left_plus=31	max_min_left=16	max_min_left_minus=15	max_min_left_plus=16	max_min_right=16	max_min_right_minus=16	max_min_right_plus=16	max_right=32	max_right_minus=32	max_right_plus=32	min_overlap_score=363	pos_hash_score=28	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=41	total_reads=41
JC	39		REL606	590471	-1	REL606	2019807	-1	0	alignment_overlap=2	coverage_minus=19	coverage_plus=16	flanking_left=36	flanking_right=36	key=REL606__590472__0__REL606__2019808__0__2____36__36__1__0	max_left=31	max_left_minus=31	max_left_plus=31	max_min_left=12	max_min_left_minus=12	max_min_left_plus=11	max_min_right=16	max_min_right_minus=16	max_min_right_plus=15	max_right=33	max_right_minus=33	max_right_plus=31	min_overlap_score=275	pos_hash_score=28	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=35	total_reads=37
JC	50		REL606	590471	-1	REL606	2283474	-1	0	alignment_overlap=2	coverage_minus=10	coverage_plus=20	flanking_left=36	flanking_right=36	key=REL606__590471__0__REL606__2283476__0__2____36__36__1__0	max_left=30	max_left_minus=30	max_left_plus=30	max_min_left=16	max_min_left_minus=11	max_min_left_plus=16	max_min_right=16	max_min_right_minus=16	max_min_right_plus=15	max_right=33	max_right_minus=33	max_right_plus=33	min_overlap_score=248	pos_hash_score=27	side_1_annotate_key=repeat	side_1_overlap=2	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=30	total_reads=32
JC	76		REL606	590471	-1	REL606	651703	1	0	alignment_overlap=1	coverage_minus=8	coverage_plus=14	flanking_left=36	flanking_right=36	key=REL606__590472__0__REL606__651703__1__1____36__36__1__0	max_left=28	max_left_minus=28	max_left_plus=25	max_min_left=17	max_min_left_minus=15	max_min_left_plus=17	max_min_right=17	max_min_right_minus=11	max_min_right_plus=17	max_right=31	max_right_minus=24	max_right_plus=31	min_overlap_score=246	pos_hash_score=19	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=22	total_reads=22
JC	80		REL606	590471	-1	REL606	899528	-1	-2	alignment_overlap=-2	coverage_minus=7	coverage_plus=6	flanking_left=36	flanking_right=36	key=REL606__590471__0__REL606__899528__0__-2__TT__36__36__0__1	max_left=32	max_left_minus=32	max_left_plus=30	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=13	max_min_right_minus=13	max_min_right_plus=12	max_right=13	max_right_minus=13	max_right_plus=12	min_overlap_score=96	pos_hash_score=10	reject=NJ	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=13	total_reads=13	unique_read_sequence=TT
JC	63		REL606	590715	1	REL606	2448493	1	0	alignment_overlap=5	coverage_minus=11	coverage_plus=8	flanking_left=36	flanking_right=36	key=REL606__590713__1__REL606__2448490__1__5____36__36__1__0	max_left=30	max_left_minus=29	max_left_plus=30	max_min_left=15	max_min_left_minus=15	max_min_left_plus=10	max_min_right=15	max_min_right_minus=15	max_min_right_plus=12	max_right=30	max_right_minus=30	max_right_plus=26	min_overlap_score=144	pos_hash_score=18	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=19	total_reads=27
JC	12		REL606	601096	1	REL606	3894996	-1	0	alignment_overlap=1	coverage_minus=27	coverage_plus=16	flanking_left=36	flanking_right=36	key=REL606__601096__1__REL606__3894997__0__1____36__36__0__1	max_left=34	max_left_minus=34	max_left_plus=34	max_min_left=17	max_min_left_minus=17	max_min_left_plus=13	max_min_right=15	max_min_right_minus=15	max_min_right_plus=14	max_right=34	max_right_minus=34	max_right_plus=34	min_overlap_score=327	pos_hash_score=29	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=43	total_reads=57
JC	205		REL606	618154	-1	REL606	2395556	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__618154__0__REL606__2395556__0__-1__G__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	133		REL606	634747	-1	REL606	4462661	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__634747__0__REL606__4462661__0__0____36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=19	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	157		REL606	646924	-1	REL606	1087828	1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__646924__0__REL606__1087828__1__-1__C__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=C
JC	57		REL606	651706	-1	REL606	3651091	1	0	alignment_overlap=2	coverage_minus=18	coverage_plus=9	flanking_left=36	flanking_right=36	key=REL606__651707__0__REL606__3651090__1__2____36__36__0__1	max_left=33	max_left_minus=31	max_left_plus=33	max_min_left=15	max_min_left_minus=15	max_min_left_plus=13	max_min_right=17	max_min_right_minus=17	max_min_right_plus=9	max_right=32	max_right_minus=29	max_right_plus=32	min_overlap_score=240	pos_hash_score=23	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=1	side_2_redundant=1	total_non_overlap_reads=27	total_reads=30
JC	79		REL606	664687	1	REL606	3126517	1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=9	flanking_left=36	flanking_right=36	key=REL606__664687__1__REL606__3126517__1__0____36__36__0__0	max_left=31	max_left_minus=31	max_left_plus=30	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=15	max_right=15	max_right_minus=15	max_right_plus=15	min_overlap_score=185	pos_hash_score=14	reject=NJ	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=17	total_reads=17
JC	23		REL606	666130	-1	REL606	969836	1	0	alignment_overlap=2	coverage_minus=22	coverage_plus=19	flanking_left=36	flanking_right=36	key=REL606__666132__0__REL606__969836__1__2____36__36__1__0	max_left=33	max_left_minus=31	max_left_plus=33	max_min_left=15	max_min_left_minus=15	max_min_left_plus=14	max_min_right=16	max_min_right_minus=16	max_min_right_plus=16	max_right=33	max_right_minus=33	max_right_plus=32	min_overlap_score=353	pos_hash_score=33	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=41	total_reads=48
JC	34		REL606	666130	-1	REL606	2999596	-1	0	alignment_overlap=0	coverage_minus=22	coverage_plus=15	flanking_left=36	flanking_right=36	key=REL606__666130__0__REL606__2999596__0__0____36__36__0__1	max_left=33	max_left_minus=33	max_left_plus=33	max_min_left=16	max_min_left_minus=16	max_min_left_plus=16	max_min_right=16	max_min_right_minus=15	max_min_right_plus=16	max_right=33	max_right_minus=30	max_right_plus=33	min_overlap_score=330	pos_hash_score=27	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=37	total_reads=37
JC	70		REL606	666130	-1	REL606	1102034	-1	0	alignment_overlap=2	coverage_minus=12	coverage_plus=13	flanking_left=36	flanking_right=36	key=REL606__666132__0__REL606__1102034__0__2____36__36__1__0	max_left=31	max_left_minus=26	max_left_plus=31	max_min_left=16	max_min_left_minus=16	max_min_left_plus=12	max_min_right=17	max_min_right_minus=17	max_min_right_plus=15	max_right=33	max_right_minus=33	max_right_plus=31	min_overlap_score=218	pos_hash_score=20	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=25	total_reads=25
JC	212		REL606	681342	-1	REL606	821578	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__681342__0__REL606__821578__0__0____36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=18	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	54		REL606	711957	-1	REL606	3894996	-1	0	alignment_overlap=1	coverage_minus=17	coverage_plus=12	flanking_left=36	flanking_right=36	key=REL606__711957__0__REL606__3894997__0__1____36__36__1__1	max_left=34	max_left_minus=33	max_left_plus=34	max_min_left=16	max_min_left_minus=16	max_min_left_plus=13	max_min_right=17	max_min_right_minus=16	max_min_right_plus=17	max_right=28	max_right_minus=26	max_right_plus=28	min_overlap_score=263	pos_hash_score=25	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=29	total_reads=31
JC	190		REL606	725168	1	REL606	4303253	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__725168__1__REL606__4303253__1__-1__G__36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=17	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	198		REL606	743720	-1	REL606	3638985	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__743720__0__REL606__3638985__1__0____36__36__0__0	max_left=35	max_left_minus=35	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	189		REL606	751568	-1	REL606	4603696	-1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__751568__0__REL606__4603700__0__4____36__36__0__1	max_left=2	max_left_minus=2	max_left_plus=0	max_min_left=2	max_min_left_minus=2	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=28	max_right_minus=28	max_right_plus=0	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=4	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	90		REL606	774276	-1	REL606	2491441	1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=5	flanking_left=36	flanking_right=36	key=REL606__774276__0__REL606__2491431__1__10____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=25	max_right_minus=0	max_right_plus=25	min_overlap_score=21	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=5	total_reads=5
JC	83		REL606	856821	1	REL606	2169877	-1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=10	flanking_left=36	flanking_right=36	key=REL606__856821__1__REL606__2169886__0__9____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=21	max_right_minus=0	max_right_plus=21	min_overlap_score=44	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=10	total_reads=10
JC	120		REL606	859309	1	REL606	2748695	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__859309__1__REL606__2748695__0__0____36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=0	max_right_plus=20	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	208		REL606	873935	1	REL606	1396244	1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__873935__1__REL606__1396244__1__-3__CCA__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CCA
JC	143		REL606	891816	1	REL606	2903565	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__891816__1__REL606__2903565__1__0____36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=18	max_min_right_minus=0	max_min_right_plus=18	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=18	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	160		REL606	893445	1	REL606	2868164	-1	-4	alignment_overlap=-4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__893445__1__REL606__2868164__0__-4__CATG__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CATG
JC	47		REL606	896463	1	REL606	3894996	-1	0	alignment_overlap=2	coverage_minus=15	coverage_plus=16	flanking_left=36	flanking_right=36	key=REL606__896463__1__REL606__3894998__0__2____36__36__0__1	max_left=31	max_left_minus=30	max_left_plus=31	max_min_left=10	max_min_left_minus=10	max_min_left_plus=10	max_min_right=17	max_min_right_minus=13	max_min_right_plus=17	max_right=33	max_right_minus=33	max_right_plus=32	min_overlap_score=240	pos_hash_score=26	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=31	total_reads=34
JC	111		REL606	907691	-1	REL606	1672058	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__907691__0__REL606__1672058__1__0____36__36__0__0	max_left=30	max_left_minus=30	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=22	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	214		REL606	916470	1	REL606	2604877	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__916470__1__REL606__2604877__0__0____36__36__1__0	max_left=35	max_left_minus=0	max_left_plus=35	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=0	max_min_right_plus=1	max_right=1	max_right_minus=0	max_right_plus=1	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	102		REL606	917490	-1	REL606	2583279	-1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=4	flanking_left=36	flanking_right=36	key=REL606__917490__0__REL606__2583281__0__2____36__36__0__1	max_left=24	max_left_minus=0	max_left_plus=24	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=55	pos_hash_score=3	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=4	total_reads=3
JC	183		REL606	933277	1	REL606	2318113	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__933277__1__REL606__2318111__1__2____36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	159		REL606	942962	-1	REL606	1111788	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__942961__0__REL606__1111788__1__1____36__36__1__0	max_left=23	max_left_minus=23	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=7	max_min_right_minus=7	max_min_right_plus=0	max_right=7	max_right_minus=7	max_right_plus=0	min_overlap_score=7	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	174		REL606	957860	-1	REL606	3801809	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__957860__0__REL606__3801809__1__0____36__36__0__1	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=15	max_min_left_minus=15	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=21	max_right_minus=21	max_right_plus=0	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	199		REL606	959041	-1	REL606	1947177	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__959041__0__REL606__1947177__0__0____36__36__0__0	max_left=14	max_left_minus=0	max_left_plus=14	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=14	max_min_right_minus=0	max_min_right_plus=14	max_right=14	max_right_minus=0	max_right_plus=14	min_overlap_score=14	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	211		REL606	962245	-1	REL606	2733810	1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__962245__0__REL606__2733810__1__-2__GT__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GT
JC	30		REL606	969838	-1	REL606	2775877	-1	0	alignment_overlap=3	coverage_minus=19	coverage_plus=15	flanking_left=36	flanking_right=36	key=REL606__969840__0__REL606__2775878__0__3____36__36__0__1	max_left=32	max_left_minus=32	max_left_plus=32	max_min_left=15	max_min_left_minus=13	max_min_left_plus=15	max_min_right=16	max_min_right_minus=15	max_min_right_plus=16	max_right=31	max_right_minus=31	max_right_plus=28	min_overlap_score=277	pos_hash_score=30	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=2	side_2_redundant=1	total_non_overlap_reads=34	total_reads=40
JC	144		REL606	1059112	-1	REL606	1101069	-1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1059109__0__REL606__1101069__0__3____36__36__1__0	max_left=28	max_left_minus=0	max_left_plus=28	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=0	max_min_right_plus=2	max_right=2	max_right_minus=0	max_right_plus=2	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=3	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	41		REL606	1102032	1	REL606	3893554	1	0	alignment_overlap=1	coverage_minus=22	coverage_plus=13	flanking_left=36	flanking_right=36	key=REL606__1102032__1__REL606__3893553__1__1____36__36__0__1	max_left=34	max_left_minus=34	max_left_plus=30	max_min_left=17	max_min_left_minus=17	max_min_left_plus=17	max_min_right=17	max_min_right_minus=16	max_min_right_plus=17	max_right=32	max_right_minus=30	max_right_plus=32	min_overlap_score=350	pos_hash_score=28	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=35	total_reads=36
JC	192		REL606	1125150	-1	REL606	4517085	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1125150__0__REL606__4517085__1__0____36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=20	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	107		REL606	1126473	-1	REL606	2064681	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1126473__0__REL606__2064681__1__0____36__36__0__0	max_left=23	max_left_minus=23	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=14	max_min_right_minus=14	max_min_right_plus=0	max_right=14	max_right_minus=14	max_right_plus=0	min_overlap_score=27	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	101		REL606	1147430	1	REL606	1773078	-1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1147430__1__REL606__1773079__0__1____36__36__0__0	max_left=27	max_left_minus=27	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=7	max_min_right_minus=7	max_min_right_plus=0	max_right=19	max_right_minus=19	max_right_plus=0	min_overlap_score=29	pos_hash_score=3	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3
JC	200		REL606	1197490	-1	REL606	1326625	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1197490__0__REL606__1326625__1__-1__A__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=19	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=A
JC	162		REL606	1228459	-1	REL606	3570330	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1228459__0__REL606__3570330__0__0____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=18	max_min_right_minus=18	max_min_right_plus=0	max_right=18	max_right_minus=18	max_right_plus=0	min_overlap_score=18	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	153		REL606	1228656	-1	REL606	1730058	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1228656__0__REL606__1730058__1__0____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=18	max_min_right_minus=18	max_min_right_plus=0	max_right=18	max_right_minus=18	max_right_plus=0	min_overlap_score=18	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	48		REL606	1270044	-1	REL606	3652533	-1	0	alignment_overlap=4	coverage_minus=17	coverage_plus=9	flanking_left=36	flanking_right=36	key=REL606__1270045__0__REL606__3652536__0__4____36__36__1__1	max_left=31	max_left_minus=31	max_left_plus=28	max_min_left=14	max_min_left_minus=14	max_min_left_plus=12	max_min_right=16	max_min_right_minus=16	max_min_right_plus=16	max_right=30	max_right_minus=30	max_right_plus=29	min_overlap_score=219	pos_hash_score=24	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=1	side_2_redundant=1	total_non_overlap_reads=26	total_reads=33
JC	84		REL606	1270439	-1	REL606	4481701	-1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=9	flanking_left=36	flanking_right=36	key=REL606__1270439__0__REL606__4481708__0__7____36__36__0__0	max_left=9	max_left_minus=0	max_left_plus=9	max_min_left=9	max_min_left_minus=0	max_min_left_plus=9	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=28	max_right_minus=0	max_right_plus=28	min_overlap_score=35	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=9	total_reads=9
JC	92		REL606	1274442	1	REL606	2895920	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=5	flanking_left=36	flanking_right=36	key=REL606__1274442__1__REL606__2895928__0__8____36__36__0__0	max_left=7	max_left_minus=0	max_left_plus=7	max_min_left=7	max_min_left_minus=0	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=27	max_right_minus=0	max_right_plus=27	min_overlap_score=23	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=5	total_reads=5
JC	108		REL606	1319507	-1	REL606	3826734	-1	-3	alignment_overlap=-3	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1319507__0__REL606__3826734__0__-3__TGT__36__36__0__0	max_left=34	max_left_minus=34	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=15	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2	unique_read_sequence=TGT
JC	36		REL606	1323488	-1	REL606	4462655	1	0	alignment_overlap=2	coverage_minus=12	coverage_plus=13	flanking_left=36	flanking_right=36	key=REL606__1323490__0__REL606__4462655__1__2____36__36__1__0	max_left=33	max_left_minus=28	max_left_plus=33	max_min_left=16	max_min_left_minus=16	max_min_left_plus=14	max_min_right=16	max_min_right_minus=12	max_min_right_plus=16	max_right=32	max_right_minus=29	max_right_plus=32	min_overlap_score=240	pos_hash_score=23	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=25	total_reads=37
JC	145		REL606	1340762	-1	REL606	4139314	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1340762__0__REL606__4139314__1__0____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	46		REL606	1353846	-1	REL606	3652533	-1	0	alignment_overlap=3	coverage_minus=16	coverage_plus=14	flanking_left=36	flanking_right=36	key=REL606__1353847__0__REL606__3652535__0__3____36__36__0__1	max_left=32	max_left_minus=31	max_left_plus=32	max_min_left=15	max_min_left_minus=15	max_min_left_plus=13	max_min_right=15	max_min_right_minus=15	max_min_right_plus=15	max_right=30	max_right_minus=30	max_right_plus=27	min_overlap_score=242	pos_hash_score=22	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=1	side_2_redundant=1	total_non_overlap_reads=30	total_reads=34
JC	67		REL606	1354425	1	REL606	3651091	1	0	alignment_overlap=1	coverage_minus=15	coverage_plus=9	flanking_left=36	flanking_right=36	key=REL606__1354425__1__REL606__3651090__1__1____36__36__0__1	max_left=33	max_left_minus=33	max_left_plus=30	max_min_left=17	max_min_left_minus=17	max_min_left_plus=15	max_min_right=17	max_min_right_minus=16	max_min_right_plus=17	max_right=31	max_right_minus=31	max_right_plus=29	min_overlap_score=237	pos_hash_score=18	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=24	total_reads=26
JC	49		REL606	1376385	-1	REL606	3894996	-1	0	alignment_overlap=1	coverage_minus=14	coverage_plus=18	flanking_left=36	flanking_right=36	key=REL606__1376385__0__REL606__3894997__0__1____36__36__0__1	max_left=33	max_left_minus=28	max_left_plus=33	max_min_left=17	max_min_left_minus=17	max_min_left_plus=17	max_min_right=16	max_min_right_minus=16	max_min_right_plus=16	max_right=34	max_right_minus=32	max_right_plus=34	min_overlap_score=333	pos_hash_score=24	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=32	total_reads=33
JC	155		REL606	1433719	-1	REL606	2144191	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1433719__0__REL606__2144191__0__-1__G__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	158		REL606	1443027	-1	REL606	4313288	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1443027__0__REL606__4313288__0__-1__G__36__36__1__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=11	max_min_right_plus=0	max_right=11	max_right_minus=11	max_right_plus=0	min_overlap_score=11	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	68		REL606	1462266	1	REL606	3894996	-1	0	alignment_overlap=1	coverage_minus=18	coverage_plus=8	flanking_left=36	flanking_right=36	key=REL606__1462266__1__REL606__3894997__0__1____36__36__0__0	max_left=34	max_left_minus=32	max_left_plus=34	max_min_left=16	max_min_left_minus=16	max_min_left_plus=9	max_min_right=17	max_min_right_minus=17	max_min_right_plus=15	max_right=30	max_right_minus=29	max_right_plus=30	min_overlap_score=192	pos_hash_score=18	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=26	total_reads=26
JC	177		REL606	1474357	1	REL606	3516167	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1474357__1__REL606__3516167__0__0____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=17	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	97		REL606	1619530	-1	REL606	1976015	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=4	flanking_left=36	flanking_right=36	key=REL606__1619530__0__REL606__1976015__0__0____36__36__0__0	max_left=23	max_left_minus=0	max_left_plus=23	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=12	max_min_right_minus=0	max_min_right_plus=12	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=45	pos_hash_score=3	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=4	total_reads=4
JC	10		REL606	1619834	1	REL606	2775877	-1	0	alignment_overlap=3	coverage_minus=23	coverage_plus=22	flanking_left=36	flanking_right=36	key=REL606__1619832__1__REL606__2775878__0__3____36__36__0__1	max_left=31	max_left_minus=31	max_left_plus=31	max_min_left=14	max_min_left_minus=14	max_min_left_plus=13	max_min_right=16	max_min_right_minus=16	max_min_right_plus=14	max_right=32	max_right_minus=32	max_right_plus=32	min_overlap_score=235	pos_hash_score=26	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=2	side_2_redundant=1	total_non_overlap_reads=45	total_reads=61
JC	35		REL606	1619836	-1	REL606	3652533	-1	0	alignment_overlap=2	coverage_minus=18	coverage_plus=17	flanking_left=36	flanking_right=36	key=REL606__1619837__0__REL606__3652534__0__2____36__36__0__0	max_left=31	max_left_minus=31	max_left_plus=31	max_min_left=16	max_min_left_minus=10	max_min_left_plus=16	max_min_right=17	max_min_right_minus=17	max_min_right_plus=17	max_right=32	max_right_minus=28	max_right_plus=32	min_overlap_score=360	pos_hash_score=28	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=1	side_2_redundant=1	total_non_overlap_reads=35	total_reads=37
JC	203		REL606	1702177	1	REL606	2136948	1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1702177__1__REL606__2136948__1__-2__AG__36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AG
JC	148		REL606	1702563	-1	REL606	4131747	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1702563__0__REL606__4131747__1__-1__A__36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=17	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=A
JC	187		REL606	1812459	1	REL606	4127721	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1812459__1__REL606__4127721__0__0____36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=18	max_min_right_minus=0	max_min_right_plus=18	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=18	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	55		REL606	1858406	-1	REL606	2448498	-1	0	alignment_overlap=3	coverage_minus=8	coverage_plus=22	flanking_left=36	flanking_right=36	key=REL606__1858406__0__REL606__2448501__0__3____36__36__0__1	max_left=31	max_left_minus=29	max_left_plus=31	max_min_left=15	max_min_left_minus=15	max_min_left_plus=15	max_min_right=16	max_min_right_minus=16	max_min_right_plus=16	max_right=32	max_right_minus=31	max_right_plus=32	min_overlap_score=228	pos_hash_score=23	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=30	total_reads=31
JC	44		REL606	1859000	1	REL606	3651091	1	0	alignment_overlap=2	coverage_minus=21	coverage_plus=13	flanking_left=36	flanking_right=36	key=REL606__1859000__1__REL606__3651089__1__2____36__36__0__1	max_left=33	max_left_minus=33	max_left_plus=32	max_min_left=13	max_min_left_minus=13	max_min_left_plus=10	max_min_right=17	max_min_right_minus=15	max_min_right_plus=17	max_right=31	max_right_minus=31	max_right_plus=30	min_overlap_score=255	pos_hash_score=25	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=34	total_reads=35
JC	69		REL606	1859002	-1	REL606	3652533	-1	0	alignment_overlap=3	coverage_minus=12	coverage_plus=9	flanking_left=36	flanking_right=36	key=REL606__1859004__0__REL606__3652534__0__3____36__36__0__1	max_left=32	max_left_minus=30	max_left_plus=32	max_min_left=14	max_min_left_minus=14	max_min_left_plus=14	max_min_right=14	max_min_right_minus=14	max_min_right_plus=12	max_right=31	max_right_minus=31	max_right_plus=20	min_overlap_score=154	pos_hash_score=18	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=2	side_2_redundant=1	total_non_overlap_reads=21	total_reads=26
JC	154		REL606	1915411	-1	REL606	1973270	1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1915411__0__REL606__1973270__1__-1__C__36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=17	max_min_left_minus=17	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=18	max_right_plus=0	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=C
JC	161		REL606	1922794	1	REL606	1923084	-1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1922794__1__REL606__1923085__0__1____36__36__0__1	max_left=25	max_left_minus=16	max_left_plus=25	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=12	max_min_right_minus=12	max_min_right_plus=10	max_right=12	max_right_minus=12	max_right_plus=10	min_overlap_score=22	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=2	total_reads=1
JC	112		REL606	1922797	1	REL606	4305057	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1922797__1__REL606__4305056__1__1____36__36__1__1	max_left=34	max_left_minus=34	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	172		REL606	1936271	-1	REL606	1936562	1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1936271__0__REL606__1936562__1__-2__GC__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GC
JC	4		REL606	1973272	1	REL606	4462663	-1	0	alignment_overlap=4	coverage_minus=11	coverage_plus=17	flanking_left=36	flanking_right=36	key=REL606__1973269__1__REL606__4462664__0__4____36__36__1__0	max_left=31	max_left_minus=31	max_left_plus=31	max_min_left=15	max_min_left_minus=15	max_min_left_plus=15	max_min_right=14	max_min_right_minus=10	max_min_right_plus=14	max_right=31	max_right_minus=25	max_right_plus=31	min_overlap_score=217	pos_hash_score=17	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=3	side_2_redundant=0	total_non_overlap_reads=28	total_reads=84
JC	196		REL606	1992401	1	REL606	4432530	-1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1992401__1__REL606__4432532__0__2____36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=0	max_min_right_plus=17	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	115		REL606	2032772	-1	REL606	2459410	1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2032772__0__REL606__2459410__1__-3__GAG__36__36__0__0	max_left=0	max_left_minus=0	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=35	max_right_minus=0	max_right_plus=35	min_overlap_score=-2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GAG
JC	66		REL606	2053849	1	REL606	2143095	-1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=14	flanking_left=36	flanking_right=36	key=REL606__2053849__1__REL606__2143095__0__0____36__36__0__1	max_left=35	max_left_minus=35	max_left_plus=29	max_min_left=17	max_min_left_minus=17	max_min_left_plus=16	max_min_right=18	max_min_right_minus=18	max_min_right_plus=17	max_right=31	max_right_minus=31	max_right_plus=31	min_overlap_score=295	pos_hash_score=24	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=26	total_reads=26
JC	42		REL606	2086865	-1	REL606	2775879	-1	-1	alignment_overlap=-1	coverage_minus=10	coverage_plus=25	flanking_left=36	flanking_right=36	key=REL606__2086865__0__REL606__2775879__0__-1__G__36__36__1__0	max_left=34	max_left_minus=34	max_left_plus=32	max_min_left=16	max_min_left_minus=15	max_min_left_plus=16	max_min_right=15	max_min_right_minus=12	max_min_right_plus=15	max_right=33	max_right_minus=31	max_right_plus=33	min_overlap_score=320	pos_hash_score=30	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=35	total_reads=35	unique_read_sequence=G
JC	138		REL606	2091435	-1	REL606	3592023	-1	-1	alignment_overlap=-1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2091435__0__REL606__3592023__0__-1__T__36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=17	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=T
JC	121		REL606	2183971	1	REL606	2583281	-1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2183973__1__REL606__2583281__0__2____36__36__1__0	max_left=32	max_left_minus=32	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=2	max_min_right_plus=0	max_right=2	max_right_minus=2	max_right_plus=0	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	98		REL606	2235988	1	REL606	3470019	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=4	flanking_left=36	flanking_right=36	key=REL606__2235988__1__REL606__3470019__0__-1__A__36__36__0__0	max_left=18	max_left_minus=0	max_left_plus=18	max_min_left=13	max_min_left_minus=0	max_min_left_plus=13	max_min_right=17	max_min_right_minus=0	max_min_right_plus=17	max_right=34	max_right_minus=0	max_right_plus=34	min_overlap_score=31	pos_hash_score=4	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=4	total_reads=4	unique_read_sequence=A
JC	129		REL606	2250771	-1	REL606	3451154	1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2250771__0__REL606__3451154__1__-1__G__36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	142		REL606	2254516	1	REL606	3164108	-1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2254516__1__REL606__3164108__0__-3__CAC__36__36__1__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CAC
JC	139		REL606	2255951	1	REL606	4598187	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2255951__1__REL606__4598187__0__-1__G__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=G
JC	52		REL606	2283472	1	REL606	3651091	1	0	alignment_overlap=1	coverage_minus=18	coverage_plus=13	flanking_left=36	flanking_right=36	key=REL606__2283472__1__REL606__3651090__1__1____36__36__0__1	max_left=34	max_left_minus=34	max_left_plus=30	max_min_left=17	max_min_left_minus=15	max_min_left_plus=17	max_min_right=15	max_min_right_minus=13	max_min_right_plus=15	max_right=30	max_right_minus=30	max_right_plus=28	min_overlap_score=284	pos_hash_score=24	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=31	total_reads=32
JC	86		REL606	2290682	-1	REL606	4066792	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=7	flanking_left=36	flanking_right=36	key=REL606__2290682__0__REL606__4066800__0__8____36__36__0__0	max_left=7	max_left_minus=0	max_left_plus=7	max_min_left=7	max_min_left_minus=0	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=26	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=7	total_reads=7
JC	150		REL606	2302484	1	REL606	2812326	-1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2302484__1__REL606__2812326__0__-3__AGC__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AGC
JC	181		REL606	2335929	-1	REL606	3085490	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2335929__0__REL606__3085488__1__2____36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	38		REL606	2397528	-1	REL606	3894996	-1	0	alignment_overlap=3	coverage_minus=19	coverage_plus=12	flanking_left=36	flanking_right=36	key=REL606__2397529__0__REL606__3894998__0__3____36__36__0__1	max_left=31	max_left_minus=31	max_left_plus=27	max_min_left=16	max_min_left_minus=16	max_min_left_plus=14	max_min_right=14	max_min_right_minus=14	max_min_right_plus=14	max_right=32	max_right_minus=30	max_right_plus=32	min_overlap_score=254	pos_hash_score=27	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=1	side_2_redundant=1	total_non_overlap_reads=31	total_reads=37
JC	18		REL606	2397543	1	REL606	3651091	1	0	alignment_overlap=3	coverage_minus=26	coverage_plus=20	flanking_left=36	flanking_right=36	key=REL606__2397541__1__REL606__3651090__1__3____36__36__0__1	max_left=32	max_left_minus=30	max_left_plus=32	max_min_left=16	max_min_left_minus=16	max_min_left_plus=15	max_min_right=16	max_min_right_minus=16	max_min_right_plus=13	max_right=32	max_right_minus=32	max_right_plus=30	min_overlap_score=403	pos_hash_score=32	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=2	side_2_redundant=1	total_non_overlap_reads=46	total_reads=50
JC	194		REL606	2445576	1	REL606	3319961	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2445576__1__REL606__3319961__1__0____36__36__1__0	max_left=35	max_left_minus=35	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	210		REL606	2478670	1	REL606	2575506	-1	0	alignment_overlap=6	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2478676__1__REL606__2575506__0__6____36__36__1__0	max_left=25	max_left_minus=0	max_left_plus=25	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=3	max_min_right_minus=0	max_min_right_plus=3	max_right=3	max_right_minus=0	max_right_plus=3	min_overlap_score=3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=6	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	81		REL606	2489063	1	REL606	2583281	-1	0	alignment_overlap=3	coverage_minus=2	coverage_plus=12	flanking_left=36	flanking_right=36	key=REL606__2489066__1__REL606__2583281__0__3____36__36__1__0	max_left=31	max_left_minus=31	max_left_plus=22	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=16	max_min_right_minus=4	max_min_right_plus=16	max_right=30	max_right_minus=4	max_right_plus=30	min_overlap_score=120	pos_hash_score=10	reject=NJ	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=3	side_2_redundant=0	total_non_overlap_reads=14	total_reads=12
JC	197		REL606	2492434	1	REL606	2918645	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2492434__1__REL606__2918645__0__0____36__36__0__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	91		REL606	2560488	1	REL606	4039097	1	0	alignment_overlap=9	coverage_minus=5	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2560488__1__REL606__4039088__1__9____36__36__0__0	max_left=21	max_left_minus=21	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=5	max_min_right_minus=5	max_min_right_plus=0	max_right=5	max_right_minus=5	max_right_plus=0	min_overlap_score=25	pos_hash_score=4	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=5	total_reads=5
JC	173		REL606	2566300	1	REL606	3849736	-1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2566300__1__REL606__3849736__0__-2__GT__36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GT
JC	141		REL606	2583282	-1	REL606	4198108	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2583282__0__REL606__4198108__0__0____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=18	max_min_right_minus=18	max_min_right_plus=0	max_right=18	max_right_minus=18	max_right_plus=0	min_overlap_score=18	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	51		REL606	2591648	1	REL606	3894996	-1	0	alignment_overlap=2	coverage_minus=11	coverage_plus=17	flanking_left=36	flanking_right=36	key=REL606__2591647__1__REL606__3894997__0__2____36__36__0__1	max_left=33	max_left_minus=31	max_left_plus=33	max_min_left=15	max_min_left_minus=10	max_min_left_plus=15	max_min_right=17	max_min_right_minus=17	max_min_right_plus=15	max_right=32	max_right_minus=32	max_right_plus=31	min_overlap_score=255	pos_hash_score=26	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=1	side_2_redundant=1	total_non_overlap_reads=28	total_reads=32
JC	14		REL606	2591650	-1	REL606	2775877	-1	-1	alignment_overlap=-1	coverage_minus=26	coverage_plus=25	flanking_left=36	flanking_right=36	key=REL606__2591650__0__REL606__2775877__0__-1__G__36__36__0__1	max_left=35	max_left_minus=31	max_left_plus=35	max_min_left=16	max_min_left_minus=16	max_min_left_plus=14	max_min_right=17	max_min_right_minus=15	max_min_right_plus=17	max_right=35	max_right_minus=35	max_right_plus=34	min_overlap_score=374	pos_hash_score=33	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=51	total_reads=51	unique_read_sequence=G
JC	167		REL606	2604704	1	REL606	4512857	-1	-5	alignment_overlap=-5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2604704__1__REL606__4512857__0__-5__CGCGA__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CGCGA
JC	75		REL606	2655781	1	REL606	3651091	1	0	alignment_overlap=3	coverage_minus=10	coverage_plus=9	flanking_left=36	flanking_right=36	key=REL606__2655779__1__REL606__3651090__1__3____36__36__0__1	max_left=31	max_left_minus=31	max_left_plus=30	max_min_left=16	max_min_left_minus=16	max_min_left_plus=14	max_min_right=15	max_min_right_minus=15	max_min_right_plus=15	max_right=27	max_right_minus=26	max_right_plus=27	min_overlap_score=175	pos_hash_score=17	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=2	side_2_redundant=1	total_non_overlap_reads=19	total_reads=23
JC	43		REL606	2655783	-1	REL606	2774435	1	0	alignment_overlap=2	coverage_minus=19	coverage_plus=14	flanking_left=36	flanking_right=36	key=REL606__2655784__0__REL606__2774434__1__2____36__36__0__1	max_left=33	max_left_minus=26	max_left_plus=33	max_min_left=16	max_min_left_minus=16	max_min_left_plus=16	max_min_right=16	max_min_right_minus=16	max_min_right_plus=14	max_right=30	max_right_minus=29	max_right_plus=30	min_overlap_score=310	pos_hash_score=24	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=1	side_2_redundant=1	total_non_overlap_reads=33	total_reads=35
JC	126		REL606	2712527	-1	REL606	2713075	1	0	alignment_overlap=19	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2712527__0__REL606__2713056__1__19____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=0	max_min_right_plus=1	max_right=1	max_right_minus=0	max_right_plus=1	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=19	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	207		REL606	2738105	-1	REL606	3936563	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2738105__0__REL606__3936563__1__0____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=17	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	82		REL606	2772217	-1	REL606	3125273	1	0	alignment_overlap=9	coverage_minus=10	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2772217__0__REL606__3125264__1__9____36__36__0__0	max_left=24	max_left_minus=24	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=8	max_min_right_minus=8	max_min_right_plus=0	max_right=8	max_right_minus=8	max_right_plus=0	min_overlap_score=34	pos_hash_score=6	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=10	total_reads=10
JC	19		REL606	2774435	1	REL606	3901135	1	0	alignment_overlap=2	coverage_minus=20	coverage_plus=28	flanking_left=36	flanking_right=36	key=REL606__2774434__1__REL606__3901134__1__2____36__36__1__0	max_left=33	max_left_minus=33	max_left_plus=33	max_min_left=12	max_min_left_minus=12	max_min_left_plus=9	max_min_right=17	max_min_right_minus=17	max_min_right_plus=17	max_right=32	max_right_minus=32	max_right_plus=32	min_overlap_score=339	pos_hash_score=34	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=48	total_reads=50
JC	40		REL606	2774435	1	REL606	2877313	1	0	alignment_overlap=4	coverage_minus=14	coverage_plus=16	flanking_left=36	flanking_right=36	key=REL606__2774432__1__REL606__2877312__1__4____36__36__1__0	max_left=30	max_left_minus=30	max_left_plus=28	max_min_left=15	max_min_left_minus=11	max_min_left_plus=15	max_min_right=16	max_min_right_minus=16	max_min_right_plus=16	max_right=31	max_right_minus=30	max_right_plus=31	min_overlap_score=240	pos_hash_score=24	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=3	side_2_redundant=0	total_non_overlap_reads=30	total_reads=36
JC	21		REL606	2775877	-1	REL606	3493826	-1	0	alignment_overlap=1	coverage_minus=23	coverage_plus=23	flanking_left=36	flanking_right=36	key=REL606__2775878__0__REL606__3493826__0__1____36__36__0__1	max_left=33	max_left_minus=32	max_left_plus=33	max_min_left=17	max_min_left_minus=17	max_min_left_plus=17	max_min_right=16	max_min_right_minus=16	max_min_right_plus=16	max_right=33	max_right_minus=33	max_right_plus=33	min_overlap_score=438	pos_hash_score=34	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=1	side_2_redundant=1	total_non_overlap_reads=46	total_reads=49
JC	25		REL606	2775877	-1	REL606	2877315	-1	0	alignment_overlap=4	coverage_minus=17	coverage_plus=20	flanking_left=36	flanking_right=36	key=REL606__2775881__0__REL606__2877315__0__4____36__36__1__0	max_left=30	max_left_minus=30	max_left_plus=30	max_min_left=15	max_min_left_minus=15	max_min_left_plus=7	max_min_right=14	max_min_right_minus=8	max_min_right_plus=14	max_right=31	max_right_minus=31	max_right_plus=30	min_overlap_score=257	pos_hash_score=29	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=4	side_2_redundant=0	total_non_overlap_reads=37	total_reads=47
JC	188		REL606	2824762	1	REL606	2829381	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2824762__1__REL606__2829381__0__0____36__36__0__0	max_left=33	max_left_minus=33	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	147		REL606	2928102	-1	REL606	4274847	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2928102__0__REL606__4274847__0__0____36__36__0__1	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=35	max_right_minus=0	max_right_plus=35	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	105		REL606	2945792	-1	REL606	3109420	-1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2945792__0__REL606__3109429__0__9____36__36__0__0	max_left=21	max_left_minus=21	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=6	max_min_right_minus=6	max_min_right_plus=0	max_right=6	max_right_minus=6	max_right_plus=0	min_overlap_score=11	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	124		REL606	3141150	1	REL606	3523887	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3141150__1__REL606__3523887__1__0____36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	213		REL606	3149240	-1	REL606	3149254	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3149240__0__REL606__3149257__0__3____36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	87		REL606	3213409	-1	REL606	3800599	1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=7	flanking_left=36	flanking_right=36	key=REL606__3213409__0__REL606__3800590__1__9____36__36__0__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=25	max_right_minus=0	max_right_plus=25	min_overlap_score=27	pos_hash_score=5	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=7	total_reads=7
JC	176		REL606	3218228	-1	REL606	3822293	-1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3218228__0__REL606__3822293__0__-2__CT__36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CT
JC	165		REL606	3232229	1	REL606	4603534	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3232229__1__REL606__4603534__0__0____36__36__0__0	max_left=34	max_left_minus=34	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=2	max_min_right_plus=0	max_right=2	max_right_minus=2	max_right_plus=0	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	201		REL606	3245422	-1	REL606	3245429	-1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3245422__0__REL606__3245433__0__4____36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=4	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	58		REL606	3482397	-1	REL606	3482423	1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=12	flanking_left=36	flanking_right=36	key=REL606__3482397__0__REL606__3482423__1__0____36__36__0__0	max_left=33	max_left_minus=28	max_left_plus=33	max_min_left=16	max_min_left_minus=16	max_min_left_plus=12	max_min_right=18	max_min_right_minus=18	max_min_right_plus=17	max_right=35	max_right_minus=35	max_right_plus=34	min_overlap_score=275	pos_hash_score=24	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=29	total_reads=29
JC	74		REL606	3493824	1	REL606	3894996	-1	0	alignment_overlap=3	coverage_minus=14	coverage_plus=6	flanking_left=36	flanking_right=36	key=REL606__3493822__1__REL606__3894997__0__3____36__36__0__1	max_left=31	max_left_minus=31	max_left_plus=30	max_min_left=15	max_min_left_minus=15	max_min_left_plus=8	max_min_right=16	max_min_right_minus=16	max_min_right_plus=13	max_right=29	max_right_minus=28	max_right_plus=29	min_overlap_score=172	pos_hash_score=18	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=2	side_2_redundant=1	total_non_overlap_reads=20	total_reads=24
JC	37		REL606	3550157	1	REL606	3893554	1	0	alignment_overlap=1	coverage_minus=16	coverage_plus=19	flanking_left=36	flanking_right=36	key=REL606__3550157__1__REL606__3893553__1__1____36__36__1__0	max_left=34	max_left_minus=33	max_left_plus=34	max_min_left=17	max_min_left_minus=15	max_min_left_plus=17	max_min_right=17	max_min_right_minus=17	max_min_right_plus=16	max_right=34	max_right_minus=33	max_right_plus=34	min_overlap_score=338	pos_hash_score=27	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=35	total_reads=37
JC	5		REL606	3651091	1	REL606	3981782	1	0	alignment_overlap=1	coverage_minus=28	coverage_plus=34	flanking_left=36	flanking_right=36	key=REL606__3651090__1__REL606__3981782__1__1____36__36__1__0	max_left=34	max_left_minus=34	max_left_plus=34	max_min_left=17	max_min_left_minus=17	max_min_left_plus=16	max_min_right=17	max_min_right_minus=11	max_min_right_plus=17	max_right=34	max_right_minus=34	max_right_plus=31	min_overlap_score=367	pos_hash_score=35	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=62	total_reads=78
JC	11		REL606	3652533	-1	REL606	3981784	-1	0	alignment_overlap=3	coverage_minus=24	coverage_plus=27	flanking_left=36	flanking_right=36	key=REL606__3652535__0__REL606__3981785__0__3____36__36__1__0	max_left=33	max_left_minus=32	max_left_plus=33	max_min_left=16	max_min_left_minus=16	max_min_left_plus=16	max_min_right=15	max_min_right_minus=15	max_min_right_plus=12	max_right=32	max_right_minus=32	max_right_plus=30	min_overlap_score=346	pos_hash_score=36	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=51	total_reads=59
JC	103		REL606	3715056	1	REL606	4110017	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3715056__1__REL606__4110016__1__1____36__36__0__0	max_left=25	max_left_minus=25	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=13	max_min_right_minus=13	max_min_right_plus=0	max_right=13	max_right_minus=13	max_right_plus=0	min_overlap_score=31	pos_hash_score=3	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3
JC	96		REL606	3715569	1	REL606	4598772	1	-2	alignment_overlap=-2	coverage_minus=0	coverage_plus=4	flanking_left=36	flanking_right=36	key=REL606__3715569__1__REL606__4598772__1__-2__GC__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=35	max_right_minus=0	max_right_plus=35	min_overlap_score=21	pos_hash_score=4	reject=NJ	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=4	total_reads=4	unique_read_sequence=GC
JC	137		REL606	3781779	1	REL606	4350243	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3781779__1__REL606__4350243__0__-4__CCAG__36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CCAG
JC	77		REL606	3894996	-1	REL606	4615673	1	0	alignment_overlap=2	coverage_minus=7	coverage_plus=14	flanking_left=36	flanking_right=36	key=REL606__3894998__0__REL606__4615673__1__2____36__36__1__0	max_left=29	max_left_minus=27	max_left_plus=29	max_min_left=16	max_min_left_minus=13	max_min_left_plus=16	max_min_right=14	max_min_right_minus=7	max_min_right_plus=14	max_right=32	max_right_minus=32	max_right_plus=31	min_overlap_score=197	pos_hash_score=19	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=21	total_reads=22
JC	135		REL606	3928932	1	REL606	4616250	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3928932__1__REL606__4616248__1__2____36__36__0__0	max_left=9	max_left_minus=9	max_left_plus=0	max_min_left=9	max_min_left_minus=9	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=19	max_right_plus=0	min_overlap_score=9	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	106		REL606	3950102	-1	REL606	4130510	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3950102__0__REL606__4130510__1__0____36__36__1__0	max_left=29	max_left_minus=29	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=19	max_right_minus=19	max_right_plus=0	min_overlap_score=17	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	171		REL606	4005987	-1	REL606	4574379	1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__4005976__0__REL606__4574379__1__11____36__36__1__0	max_left=25	max_left_minus=24	max_left_plus=25	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=-5	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=11	side_2_redundant=0	total_non_overlap_reads=2	total_reads=1
JC	185		REL606	4007226	1	REL606	4500180	-1	-2	alignment_overlap=-2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__4007226__1__REL606__4500180__0__-2__GC__36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_right=16	max_right_minus=16	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GC
JC	156		REL606	4053621	-1	REL606	4053626	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__4053621__0__REL606__4053626__1__0____36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=16	max_min_left_minus=16	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=20	max_right_plus=0	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	170		REL606	4074096	1	REL606	4088138	-1	0	alignment_overlap=13	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__4074096__1__REL606__4088151__0__13____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=5	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=13	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	22		REL606	4205068	-1	REL606	4205074	1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=27	flanking_left=36	flanking_right=36	key=REL606__4205068__0__REL606__4205074__1__0____36__36__0__0	max_left=34	max_left_minus=34	max_left_plus=32	max_min_left=17	max_min_left_minus=16	max_min_left_plus=17	max_min_right=18	max_min_right_minus=18	max_min_right_plus=18	max_right=33	max_right_minus=32	max_right_plus=33	min_overlap_score=518	pos_hash_score=24	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=45	total_reads=48
JC	140		REL606	4453688	-1	REL606	4453719	-1	0	alignment_overlap=4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__4453688__0__REL606__4453723__0__4____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=21	max_right_minus=0	max_right_plus=21	min_overlap_score=5	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=4	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
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UN	307		REL606	589581	590296
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UN	342		REL606	718027	718146
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UN	347		REL606	718776	718776
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UN	367		REL606	931779	931825
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UN	406		REL606	1349579	1349579
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UN	420		REL606	1424825	1424830
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UN	423		REL606	1425187	1425245
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UN	429		REL606	1425619	1425856
UN	430		REL606	1425917	1425995
UN	431		REL606	1426088	1426253
UN	432		REL606	1442666	1443864
UN	433		REL606	1460185	1460900
UN	434		REL606	1462263	1462265
UN	435		REL606	1498103	1498391
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UN	438		REL606	1498597	1498779
UN	439		REL606	1498841	1498869
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UN	441		REL606	1499288	1499288
UN	442		REL606	1500304	1503143
UN	443		REL606	1503202	1503706
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UN	445		REL606	1506265	1506363
UN	446		REL606	1506531	1506792
UN	447		REL606	1506841	1506999
UN	448		REL606	1507115	1507121
UN	449		REL606	1522162	1522171
UN	450		REL606	1544698	1544793
UN	451		REL606	1544838	1544838
UN	452		REL606	1544844	1545052
UN	453		REL606	1545116	1545268
UN	454		REL606	1545387	1545670
UN	455		REL606	1545672	1545672
UN	456		REL606	1600411	1600580
UN	457		REL606	1600582	1600582
UN	458		REL606	1600670	1600670
UN	459		REL606	1600672	1600750
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UN	461		REL606	1601124	1601166
UN	462		REL606	1601228	1601302
UN	463		REL606	1601360	1601370
UN	464		REL606	1601427	1601486
UN	465		REL606	1601488	1601488
UN	466		REL606	1601539	1601771
UN	467		REL606	1601836	1601851
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UN	469		REL606	1602199	1602199
UN	470		REL606	1602609	1602678
UN	471		REL606	1602743	1602807
UN	472		REL606	1603248	1603258
UN	473		REL606	1603385	1603414
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UN	475		REL606	1604598	1604599
UN	476		REL606	1604601	1604602
UN	477		REL606	1604662	1604685
UN	478		REL606	1604748	1604759
UN	479		REL606	1605117	1605131
UN	480		REL606	1605498	1605852
UN	481		REL606	1606628	1607887
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UN	483		REL606	1607892	1607892
UN	485		REL606	1607946	1616706
UN	486		REL606	1618036	1618054
UN	488		REL606	1685888	1686065
UN	492		REL606	1857086	1858374
UN	496		REL606	1970059	1970059
UN	497		REL606	1970064	1970077
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UN	567		REL606	2713086	2713112
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UN	569		REL606	2713357	2713376
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UN	584		REL606	2882740	2883935
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UN	609		REL606	3351348	3351391
UN	610		REL606	3351584	3351638
UN	611		REL606	3351696	3354264
UN	612		REL606	3354325	3356868
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UN	615		REL606	3398784	3398918
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UN	617		REL606	3399055	3399072
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UN	625		REL606	3551322	3552234
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UN	629		REL606	3552506	3552506
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